RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 CPXM2Q8N436 756 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 MR1Q95460 341 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 KIRREL1Q96J84 757 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 C4orf36Q96KX1 117 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 RBP7Q96R05 134 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 NICN1Q9BSH3 213 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 OBP2AQ9NY56 170 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 MYH6P13533 1939 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 A0A1W2PPV4 95 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 SYNGR4O95473 234 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 GPR4P46093 362 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 HYAL2Q12891 473 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 PRRT3Q5FWE3 981 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 LCTLQ6UWM7 567 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 ISCA2Q86U28 154 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 TDHQ8IZJ6 230 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 FAM24BQ8N5W8 94 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 IL22RA1Q8N6P7 574 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 OR4C15Q8NGM1 316 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 CMBLQ96DG6 245 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 MS4A10Q96PG2 267 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.34□□□□□ -0.43
USP40-208ENST00000450966 CXXC1Q9P0U4 656 aaPredicted RBP12.34□□□□□ -0.43
USP40-208ENST00000450966 APOBEC3BQ9UH17 382 aaKnown RBP12.34□□□□□ -0.43
USP40-208ENST00000450966 ELF5Q9UKW6 265 aaPredicted RBP12.34□□□□□ -0.43
USP40-208ENST00000450966 CSAG2Q9Y5P2 127 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 IL5P05113 134 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 TRHRP34981 398 aaPredicted RBP12.34□□□□□ -0.43
USP40-208ENST00000450966 TAS2R46P59540 309 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 CST9Q5W186 159 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 OR5M10Q6IEU7 315 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 TBPL2Q6SJ96 375 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 AMBRA1Q9C0C7 1298 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 NHSQ6T4R5 1651 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 A0A1W2PPQ1 181 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 PRAMEF26H0Y7S4 382 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 NME2P1O60361 137 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 IL33O95760 270 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 H2BFMP0C1H6 154 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 ATXN1LP0C7T5 689 aaKnown RBP12.34□□□□□ -0.43
USP40-208ENST00000450966 OR12D1P0DN82 309 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 PTGFRP43088 359 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 RAD52P43351 418 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 SNRPGP62308 76 aaKnown RBP12.34□□□□□ -0.43
USP40-208ENST00000450966 OLIG2Q13516 323 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 BTNL8Q6UX41 500 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 MEPCEQ7L2J0 689 aaKnown RBP12.34□□□□□ -0.43
USP40-208ENST00000450966 MAVSQ7Z434 540 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 C12orf76Q8N812 135 aaPredicted RBP12.34□□□□□ -0.43
USP40-208ENST00000450966 RSRP1Q9BUV0 290 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 GABARAPL1Q9H0R8 117 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 POFUT1Q9H488 388 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 RNF167Q9H6Y7 350 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 DLL4Q9NR61 685 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 SLC39A9Q9NUM3 307 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 B4GALT6Q9UBX8 382 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 RARRES3Q9UL19 164 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 G3V3Q6 166 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 CLEC3BP05452 202 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 CR2P20023 1033 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 PSMB6P28072 239 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 THBS3P49746 956 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 LRFN4Q6PJG9 635 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 TRILQ7L0X0 811 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 C22orf15Q8WYQ4 148 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 NAT6Q93015 286 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 PEBP4Q96S96 227 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 FTSJ1Q9UET6 329 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 MUTYHQ9UIF7 546 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 SHC1P29353 583 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 TACR3P29371 465 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 KRTDAPP60985 99 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 P2RY14Q15391 338 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 MPPED2Q15777 294 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 MAJINQ3KP22 176 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 FAM71CQ8NEG0 241 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 OR51A7Q8NH64 312 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 RAB24Q969Q5 203 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 ZNF576Q9H609 170 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 CWH43Q9H720 699 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 NDRG4Q9ULP0 352 aaKnown RBP12.33□□□□□ -0.44
USP40-208ENST00000450966 OSGIN2Q9Y236 505 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 PLRG1O43660 514 aaKnown RBP12.33□□□□□ -0.44
USP40-208ENST00000450966 S1PR4O95977 384 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 GLULP15104 373 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 SGSHP51688 502 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 POLR2HP52434 150 aaKnown RBP12.33□□□□□ -0.44
USP40-208ENST00000450966 PLP2Q04941 152 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 SLC10A1Q14973 349 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 MANEAQ5SRI9 462 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 UNC5DQ6UXZ4 953 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 GOT1L1Q8NHS2 421 aaPredicted RBP12.33□□□□□ -0.44
USP40-208ENST00000450966 ZNF681Q96N22 645 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 WFIKKN1Q96NZ8 548 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 MARVELD1Q9BSK0 173 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 TMEM121BQ9BXQ6 578 aaPredicted RBP12.33□□□□□ -0.44
USP40-208ENST00000450966 GPR87Q9BY21 358 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 UBQLN4Q9NRR5 601 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 SNX11Q9Y5W9 270 aa12.33□□□□□ -0.44
USP40-208ENST00000450966 UBR2Q8IWV8 1755 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms