RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 OR1L3Q8NH93 324 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 DPAGT1Q9H3H5 408 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 J3QRE1 110 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 OR2T7P0C7T2 308 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 HLA-DOBP13765 273 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 MST1P26927 711 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 DCTDP32321 178 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 DIO1P49895 249 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 TMEM69Q5SWH9 247 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 CARD17Q5XLA6 110 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 OR51D1Q8NGF3 324 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 OR2T27Q8NH04 317 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 OR5AK2Q8NH90 309 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 NOTOA8MTQ0 251 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 MASP2O00187 686 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 ARPC1BO15143 372 aaKnown RBP12.17□□□□□ -0.46
VPS54-203ENST00000409558 SIX6O95475 246 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 NSA2O95478 260 aaKnown RBP12.17□□□□□ -0.46
VPS54-203ENST00000409558 HRGP04196 525 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 EFNA3P52797 238 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 ACTC1P68032 377 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 ACTA1P68133 377 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 GUCA2AQ02747 115 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 FMODQ06828 376 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 FGD2Q7Z6J4 655 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 GPAT4Q86UL3 456 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 COMMD2Q86X83 199 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 MS4A15Q8N5U1 240 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 ZNF431Q8TF32 576 aaPredicted RBP12.17□□□□□ -0.46
VPS54-203ENST00000409558 C5orf34Q96MH7 638 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 PPIEQ9UNP9 301 aaKnown RBP12.17□□□□□ -0.46
VPS54-203ENST00000409558 ASPMQ8IZT6 3477 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 A0A0G2JK05 382 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 G3V3Y1 287 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 SRPX2O60687 465 aaPredicted RBP12.17□□□□□ -0.46
VPS54-203ENST00000409558 SLC2A5P22732 501 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 AP2S1P53680 142 aaPredicted RBP12.17□□□□□ -0.46
VPS54-203ENST00000409558 EGR4Q05215 589 aa12.17□□□□□ -0.46
VPS54-203ENST00000409558 TRAV8-7A0A075B6U6 113 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 TRABD2BA6NFA1 517 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 SHISA7A6NL88 538 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 SLC43A1O75387 559 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 RORAP35398 523 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 ZNF81P51508 661 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 GLB1L2Q8IW92 636 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 LILRB4Q8NHJ6 448 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 ZNF775Q96BV0 537 aaPredicted RBP12.16□□□□□ -0.46
VPS54-203ENST00000409558 DPCDQ9BVM2 203 aaPredicted RBP12.16□□□□□ -0.46
VPS54-203ENST00000409558 FGF21Q9NSA1 209 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 MED29Q9NX70 200 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 MRPL39Q9NYK5 338 aaKnown RBP12.16□□□□□ -0.46
VPS54-203ENST00000409558 CLDN16Q9Y5I7 305 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 ANKRD34BA5PLL1 514 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 CD14P08571 375 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 ANXA7P20073 488 aaKnown RBP12.16□□□□□ -0.46
VPS54-203ENST00000409558 NPR2P20594 1047 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 ZNF74Q16587 644 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 WBP2NLQ6ICG8 309 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 ZCCHC12Q6PEW1 402 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 OR52B4Q8NGK2 314 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 FAM46BQ96A09 425 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 WDR89Q96FK6 387 aaPredicted RBP12.16□□□□□ -0.46
VPS54-203ENST00000409558 ISYNA1Q9NPH2 558 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 STMN3Q9NZ72 180 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 MED11Q9P086 117 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 ZNF69Q9UC07 566 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 PRODH2Q9UF12 536 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 ZNF593O00488 134 aaPredicted RBP12.16□□□□□ -0.46
VPS54-203ENST00000409558 KDM4BO94953 1096 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 HPXP02790 462 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 FBLP22087 321 aaKnown RBP12.16□□□□□ -0.46
VPS54-203ENST00000409558 CLDN20P56880 219 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 TAS2R43P59537 309 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 FOXK1P85037 733 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 ZNF615Q8N8J6 731 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 ELOVL3Q9HB03 270 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 MMP25Q9NPA2 562 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 SLCO1C1Q9NYB5 712 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 COPS7AQ9UBW8 275 aa12.16□□□□□ -0.46
VPS54-203ENST00000409558 CGGBP1Q9UFW8 167 aaPredicted RBP12.16□□□□□ -0.46
VPS54-203ENST00000409558 SLC37A1P57057 533 aa12.15□□□□□ -0.46
VPS54-203ENST00000409558 ADAM8P78325 824 aa12.15□□□□□ -0.46
VPS54-203ENST00000409558 LPAL2Q16609 132 aa12.15□□□□□ -0.46
VPS54-203ENST00000409558 MESTQ5EB52 335 aa12.15□□□□□ -0.46
VPS54-203ENST00000409558 DPY19L2P2Q6ZN68 376 aa12.15□□□□□ -0.46
VPS54-203ENST00000409558 ZNF627Q7L945 461 aa12.15□□□□□ -0.46
VPS54-203ENST00000409558 OR2T4Q8NH00 348 aa12.15□□□□□ -0.46
VPS54-203ENST00000409558 YIPF5Q969M3 257 aa12.15□□□□□ -0.46
VPS54-203ENST00000409558 TSPAN32Q96QS1 320 aa12.15□□□□□ -0.46
VPS54-203ENST00000409558 SLC23A1Q9UHI7 598 aa12.15□□□□□ -0.46
VPS54-203ENST00000409558 MTCH2Q9Y6C9 303 aa12.15□□□□□ -0.46
VPS54-203ENST00000409558 DHPSP49366 369 aaPredicted RBP12.15□□□□□ -0.46
VPS54-203ENST00000409558 ARFIP1P53367 373 aa12.15□□□□□ -0.46
VPS54-203ENST00000409558 PYHIN1Q6K0P9 492 aa12.15□□□□□ -0.46
VPS54-203ENST00000409558 OR11H7Q8NGC8 314 aa12.15□□□□□ -0.46
VPS54-203ENST00000409558 SPACA5Q96QH8 159 aa12.15□□□□□ -0.46
VPS54-203ENST00000409558 NRIP3Q9NQ35 241 aa12.15□□□□□ -0.46
VPS54-203ENST00000409558 MN1Q10571 1320 aaPredicted RBP12.15□□□□□ -0.46
VPS54-203ENST00000409558 ZNF879B4DU55 563 aa12.15□□□□□ -0.46
VPS54-203ENST00000409558 WNT11O96014 354 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms