RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.81□□□□□ -1
COL6A3-204ENST00000392003 C9orf152Q5JTZ5 239 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 FAM27D1Q5T7N8 215 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 RPTNQ6XPR3 784 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 GATSQ8NAP1 163 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 OR5J2Q8NH18 312 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 OR4C3Q8NH37 302 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 OR6S1Q8NH40 331 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 TRMT10AQ8TBZ6 339 aaKnown RBP8.81□□□□□ -1
COL6A3-204ENST00000392003 RFT1Q96AA3 541 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 ZC3HAV1LQ96H79 300 aaKnown RBP8.81□□□□□ -1
COL6A3-204ENST00000392003 CCNL2Q96S94 520 aaPredicted RBP8.81□□□□□ -1
COL6A3-204ENST00000392003 UBQLN4Q9NRR5 601 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 CYSLTR2Q9NS75 346 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 EPHA6Q9UF33 1036 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 ICAM5Q9UMF0 924 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 OR2W5A6NFC9 320 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 C17orf105B2RV13 164 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 MCIDASD6RGH6 385 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 NPIPB9F8W1W9 429 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 TGFBR3LH3BV60 316 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 DVL2O14641 736 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 FLRT2O43155 660 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 HTR3BO95264 441 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 ACAA1P09110 424 aaPredicted RBP8.81□□□□□ -1
COL6A3-204ENST00000392003 CT45A8P0DMV1 189 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 CT45A9P0DMV2 189 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 HLA-DMAP28067 261 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 RBMS1P29558 406 aaKnown RBP8.81□□□□□ -1
COL6A3-204ENST00000392003 PITPNBP48739 271 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 FUT7Q11130 342 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 FZD5Q13467 585 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 CT45A2Q5DJT8 189 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 CHCHD2P9Q5T1J5 151 aaPredicted RBP8.81□□□□□ -1
COL6A3-204ENST00000392003 BICRALQ6AI39 1079 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 DMKNQ6E0U4 476 aaPredicted RBP8.81□□□□□ -1
COL6A3-204ENST00000392003 WBP2NLQ6ICG8 309 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 PRSS58Q8IYP2 241 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 SYS1Q8N2H4 156 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 SPEM1Q8N4L4 309 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 Q8NFD4 153 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 OR8H1Q8NGG4 311 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 THAP4Q8WY91 577 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 GTF3AQ92664 365 aaKnown RBP8.81□□□□□ -1
COL6A3-204ENST00000392003 ZDHHC12Q96GR4 267 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 WNT16Q9UBV4 365 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 CHRNA9Q9UGM1 479 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 CLEC4AQ9UMR7 237 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 NPFFR2Q9Y5X5 522 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 TRBV2A0A0J9YWF9 115 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 TLCD2A6NGC4 264 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 BLOC1S5-TXNDC5H3BN57 136 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 HOXA6P31267 233 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 GPX4P36969 197 aaPredicted RBP8.81□□□□□ -1
COL6A3-204ENST00000392003 DHPSP49366 369 aaPredicted RBP8.81□□□□□ -1
COL6A3-204ENST00000392003 CHAF1BQ13112 559 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 TATDN3Q17R31 274 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.81□□□□□ -1
COL6A3-204ENST00000392003 PAN3Q58A45 887 aaKnown RBP8.81□□□□□ -1
COL6A3-204ENST00000392003 SLC35D3Q5M8T2 416 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 HES5Q5TA89 166 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 RPL22L1Q6P5R6 122 aaKnown RBP8.81□□□□□ -1
COL6A3-204ENST00000392003 IL20RBQ6UXL0 311 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 LINC00114Q6XXX2 140 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 ASB18Q6ZVZ8 466 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 ZNF671Q8TAW3 534 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 CDX2Q99626 313 aaPredicted RBP8.81□□□□□ -1
COL6A3-204ENST00000392003 SLC19A3Q9BZV2 496 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 GPR27Q9NS67 375 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 ADAM18Q9Y3Q7 739 aa8.81□□□□□ -1
COL6A3-204ENST00000392003 LRP4O75096 1905 aa8.8□□□□□ -1
COL6A3-204ENST00000392003 LRRN3E7EW58 273 aa8.8□□□□□ -1
COL6A3-204ENST00000392003 INMT-MINDY4F8WBC2 141 aa8.8□□□□□ -1
COL6A3-204ENST00000392003 H0YIG0 161 aa8.8□□□□□ -1
COL6A3-204ENST00000392003 SIGLEC5O15389 551 aa8.8□□□□□ -1
COL6A3-204ENST00000392003 TRIM3O75382 744 aaPredicted RBP8.8□□□□□ -1
COL6A3-204ENST00000392003 WNT1P04628 370 aa8.8□□□□□ -1
COL6A3-204ENST00000392003 HIST1H2ABP04908 130 aa8.8□□□□□ -1
COL6A3-204ENST00000392003 CD1CP29017 333 aa8.8□□□□□ -1
COL6A3-204ENST00000392003 FNTBP49356 437 aa8.8□□□□□ -1
COL6A3-204ENST00000392003 DIO1P49895 249 aa8.8□□□□□ -1
COL6A3-204ENST00000392003 HCCSP53701 268 aa8.8□□□□□ -1
COL6A3-204ENST00000392003 ERVK-25P63136 954 aa8.8□□□□□ -1
COL6A3-204ENST00000392003 SIRPAP78324 504 aa8.8□□□□□ -1
COL6A3-204ENST00000392003 SIGLEC14Q08ET2 396 aa8.8□□□□□ -1
COL6A3-204ENST00000392003 ZBTB37Q5TC79 503 aa8.8□□□□□ -1
COL6A3-204ENST00000392003 NKAIN2Q5VXU1 208 aa8.8□□□□□ -1
COL6A3-204ENST00000392003 HLA-DQA1Q5Y7H0 255 aa8.8□□□□□ -1
COL6A3-204ENST00000392003 MED25Q71SY5 747 aa8.8□□□□□ -1
COL6A3-204ENST00000392003 HIST3H2AQ7L7L0 130 aa8.8□□□□□ -1
COL6A3-204ENST00000392003 GPR135Q8IZ08 494 aa8.8□□□□□ -1
COL6A3-204ENST00000392003 ARHGEF39Q8N4T4 335 aa8.8□□□□□ -1
COL6A3-204ENST00000392003 LRRC17Q8N6Y2 441 aa8.8□□□□□ -1
COL6A3-204ENST00000392003 DUSP18Q8NEJ0 188 aa8.8□□□□□ -1
COL6A3-204ENST00000392003 C17orf47Q8NEP4 570 aa8.8□□□□□ -1
COL6A3-204ENST00000392003 ZNF563Q8TA94 476 aa8.8□□□□□ -1
COL6A3-204ENST00000392003 HIST1H2ACQ93077 130 aa8.8□□□□□ -1
COL6A3-204ENST00000392003 UBL7Q96S82 380 aaPredicted RBP8.8□□□□□ -1
COL6A3-204ENST00000392003 NMNAT3Q96T66 252 aa8.8□□□□□ -1
COL6A3-204ENST00000392003 TIMP4Q99727 224 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms