RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 GLYR1Q49A26 553 aaPredicted RBP16.43■□□□□ 0.22
CCDC88C-203ENST00000389856 LCN1P1Q5VSP4 162 aa16.43■□□□□ 0.22
CCDC88C-203ENST00000389856 B3GNTL1Q67FW5 361 aaPredicted RBP16.43■□□□□ 0.22
CCDC88C-203ENST00000389856 NIPAL3Q6P499 406 aa16.43■□□□□ 0.22
CCDC88C-203ENST00000389856 PLBD1Q6P4A8 553 aa16.43■□□□□ 0.22
CCDC88C-203ENST00000389856 JAZF1Q86VZ6 243 aa16.43■□□□□ 0.22
CCDC88C-203ENST00000389856 ZNF248Q8NDW4 579 aa16.43■□□□□ 0.22
CCDC88C-203ENST00000389856 GATAD2BQ8WXI9 593 aa16.43■□□□□ 0.22
CCDC88C-203ENST00000389856 PSMF1Q92530 271 aa16.43■□□□□ 0.22
CCDC88C-203ENST00000389856 TM9SF4Q92544 642 aa16.43■□□□□ 0.22
CCDC88C-203ENST00000389856 ZNF524Q96C55 264 aa16.43■□□□□ 0.22
CCDC88C-203ENST00000389856 ENKD1Q9H0I2 346 aa16.43■□□□□ 0.22
CCDC88C-203ENST00000389856 HINT3Q9NQE9 182 aaKnown RBP16.43■□□□□ 0.22
CCDC88C-203ENST00000389856 MRPL39Q9NYK5 338 aaKnown RBP16.43■□□□□ 0.22
CCDC88C-203ENST00000389856 DKKL1Q9UK85 242 aa16.43■□□□□ 0.22
CCDC88C-203ENST00000389856 IER3IP1Q9Y5U9 82 aa16.43■□□□□ 0.22
CCDC88C-203ENST00000389856 AHCTF1Q8WYP5 2266 aa16.42■□□□□ 0.22
CCDC88C-203ENST00000389856 TFPIP10646 304 aa16.42■□□□□ 0.22
CCDC88C-203ENST00000389856 DPP4P27487 766 aa16.42■□□□□ 0.22
CCDC88C-203ENST00000389856 RPL18Q07020 188 aaKnown RBP16.42■□□□□ 0.22
CCDC88C-203ENST00000389856 POU4F2Q12837 409 aa16.42■□□□□ 0.22
CCDC88C-203ENST00000389856 CRTC2Q53ET0 693 aaPredicted RBP16.42■□□□□ 0.22
CCDC88C-203ENST00000389856 OR2G6Q5TZ20 316 aa16.42■□□□□ 0.22
CCDC88C-203ENST00000389856 SNX29P2Q8IUI4 249 aa16.42■□□□□ 0.22
CCDC88C-203ENST00000389856 ACBD7Q8N6N7 88 aa16.42■□□□□ 0.22
CCDC88C-203ENST00000389856 CHAC2Q8WUX2 184 aa16.42■□□□□ 0.22
CCDC88C-203ENST00000389856 SLC25A36Q96CQ1 311 aa16.42■□□□□ 0.22
CCDC88C-203ENST00000389856 NTNG2Q96CW9 530 aa16.42■□□□□ 0.22
CCDC88C-203ENST00000389856 TRMT61AQ96FX7 289 aaKnown RBP16.42■□□□□ 0.22
CCDC88C-203ENST00000389856 KATNB1Q9BVA0 655 aa16.42■□□□□ 0.22
CCDC88C-203ENST00000389856 PTDSS2Q9BVG9 487 aa16.42■□□□□ 0.22
CCDC88C-203ENST00000389856 DLL3Q9NYJ7 618 aa16.42■□□□□ 0.22
CCDC88C-203ENST00000389856 GRHPRQ9UBQ7 328 aa16.42■□□□□ 0.22
CCDC88C-203ENST00000389856 MPDZO75970 2070 aa16.42■□□□□ 0.22
CCDC88C-203ENST00000389856 TRIM3O75382 744 aaPredicted RBP16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 ZNF17P17021 662 aa16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 PTBP1P26599 531 aaKnown RBP eCLIP16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 SDHAP31040 664 aa16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 CTXN1P60606 82 aa16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 RPS7P62081 194 aaKnown RBP16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 LTBQ06643 244 aa16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 TRAM1Q15629 374 aa16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 DDI2Q5TDH0 399 aa16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 MARCH9Q86YJ5 346 aa16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 CADM3Q8N126 398 aa16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 GTPBP8Q8N3Z3 284 aaPredicted RBP16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 OR52E2Q8NGJ4 325 aa16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 MOSPD2Q8NHP6 518 aa16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 ZNF649Q9BS31 505 aa16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 INIPQ9NRY2 104 aa16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 ALKBH4Q9NXW9 302 aa16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 LRFN1Q9P244 771 aa16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 FBXL2Q9UKC9 423 aa16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 BOKQ9UMX3 212 aaPredicted RBP16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 ZC3H12DA2A288 527 aaKnown RBP16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 GJE1A6NN92 205 aa16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 BOLA2-SMG1P6H3BVE0 249 aa16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 SLC2A10O95528 541 aa16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 TXNDC12O95881 172 aa16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 GRPRP30550 384 aa16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 RPS25P62851 125 aaKnown RBP16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 ERVK-25P63136 954 aa16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 NHLH1Q02575 133 aa16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 CRMP1Q14194 572 aa16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 C22orf42Q6IC83 251 aa16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 ZNF322Q6U7Q0 402 aaPredicted RBP16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 SLC37A3Q8NCC5 494 aa16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 JSRP1Q96MG2 331 aaPredicted RBP16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 HAO2Q9NYQ3 351 aa16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 HDGFL3Q9Y3E1 203 aa16.41■□□□□ 0.22
CCDC88C-203ENST00000389856 ZNF292O60281 2723 aa16.4■□□□□ 0.22
CCDC88C-203ENST00000389856 MASP2O00187 686 aa16.4■□□□□ 0.22
CCDC88C-203ENST00000389856 RGS5O15539 181 aa16.4■□□□□ 0.22
CCDC88C-203ENST00000389856 RNF13O43567 381 aa16.4■□□□□ 0.22
CCDC88C-203ENST00000389856 HIST1H1CP16403 213 aaKnown RBP16.4■□□□□ 0.22
CCDC88C-203ENST00000389856 CNR1P21554 472 aa16.4■□□□□ 0.22
CCDC88C-203ENST00000389856 SRD5A2P31213 254 aa16.4■□□□□ 0.22
CCDC88C-203ENST00000389856 SOX8P57073 446 aa16.4■□□□□ 0.22
CCDC88C-203ENST00000389856 TAS2R43P59537 309 aa16.4■□□□□ 0.22
CCDC88C-203ENST00000389856 KLHL12Q53G59 568 aa16.4■□□□□ 0.22
CCDC88C-203ENST00000389856 SLC35D3Q5M8T2 416 aa16.4■□□□□ 0.22
CCDC88C-203ENST00000389856 ZNF468Q5VIY5 522 aaPredicted RBP16.4■□□□□ 0.22
CCDC88C-203ENST00000389856 XKRXQ6PP77 449 aa16.4■□□□□ 0.22
CCDC88C-203ENST00000389856 METAP1DQ6UB28 335 aaPredicted RBP16.4■□□□□ 0.22
CCDC88C-203ENST00000389856 GALNT16Q8N428 558 aa16.4■□□□□ 0.22
CCDC88C-203ENST00000389856 GDPD1Q8N9F7 314 aa16.4■□□□□ 0.22
CCDC88C-203ENST00000389856 LRRC75AQ8NAA5 344 aa16.4■□□□□ 0.22
CCDC88C-203ENST00000389856 FAM83FQ8NEG4 500 aaPredicted RBP16.4■□□□□ 0.22
CCDC88C-203ENST00000389856 OR4F15Q8NGB8 312 aa16.4■□□□□ 0.22
CCDC88C-203ENST00000389856 OR4K13Q8NH42 304 aa16.4■□□□□ 0.22
CCDC88C-203ENST00000389856 TXNDC15Q96J42 360 aa16.4■□□□□ 0.22
CCDC88C-203ENST00000389856 PIGQQ9BRB3 760 aa16.4■□□□□ 0.22
CCDC88C-203ENST00000389856 OR11A1Q9GZK7 315 aa16.4■□□□□ 0.22
CCDC88C-203ENST00000389856 KLHL1Q9NR64 748 aa16.4■□□□□ 0.22
CCDC88C-203ENST00000389856 B4GALT7Q9UBV7 327 aa16.4■□□□□ 0.22
CCDC88C-203ENST00000389856 ZFHX2Q9C0A1 2572 aaPredicted RBP16.39■□□□□ 0.21
CCDC88C-203ENST00000389856 A0A1W2PRG6 482 aa16.39■□□□□ 0.21
CCDC88C-203ENST00000389856 FAM183AA6NL82 134 aa16.39■□□□□ 0.21
CCDC88C-203ENST00000389856 XKRYO14609 159 aa16.39■□□□□ 0.21
CCDC88C-203ENST00000389856 RENP00797 406 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms