RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 ALG12Q9BV10 488 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 NDEL1Q9GZM8 345 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 SLIRPQ9GZT3 109 aaKnown RBP12.39□□□□□ -0.43
PTPRF-202ENST00000372405 TXNIPQ9H3M7 391 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 WDR70Q9NW82 654 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 RPH3AQ9Y2J0 694 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-202ENST00000372405 CORINQ9Y5Q5 1042 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 SIRT4Q9Y6E7 314 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-202ENST00000372405 ARHGEF9O43307 516 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 GLCEO94923 617 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 F10P00742 488 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 INHBBP09529 407 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 CSRP1P21291 193 aaKnown RBP12.39□□□□□ -0.43
PTPRF-202ENST00000372405 PSMA1P25786 263 aaKnown RBP12.39□□□□□ -0.43
PTPRF-202ENST00000372405 DPP4P27487 766 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 ADH6P28332 368 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 RUNX1T1Q06455 604 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 LGALS3BPQ08380 585 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 PUDPQ08623 228 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 ZP4Q12836 540 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 TIMM50Q3ZCQ8 353 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 LCN1P1Q5VSP4 162 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 H1FNTQ75WM6 255 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-202ENST00000372405 PM20D2Q8IYS1 436 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 GTPBP8Q8N3Z3 284 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-202ENST00000372405 SCAIQ8N9R8 606 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 POMGNT2Q8NAT1 580 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 ZNF511Q8NB15 262 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 TMEM203Q969S6 136 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 ZBTB8AQ96BR9 441 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 TMEM41AQ96HV5 264 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 JSRP1Q96MG2 331 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-202ENST00000372405 SYT4Q9H2B2 425 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 CCDC86Q9H6F5 360 aaKnown RBP12.39□□□□□ -0.43
PTPRF-202ENST00000372405 SRA1Q9HD15 236 aaKnown RBP12.39□□□□□ -0.43
PTPRF-202ENST00000372405 DEPPQ9NTK1 212 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 STUB1Q9UNE7 303 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 COPS3Q9UNS2 423 aa12.39□□□□□ -0.43
PTPRF-202ENST00000372405 A0A087WZY1 265 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 A0A1W2PNR3 127 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 E9PI62 339 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 MAGEB4O15481 346 aaPredicted RBP12.38□□□□□ -0.43
PTPRF-202ENST00000372405 AKR7A3O95154 331 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 OR6A2O95222 327 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 ACVR1BP36896 505 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 EIF1P41567 113 aaKnown RBP12.38□□□□□ -0.43
PTPRF-202ENST00000372405 P2RY4P51582 365 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 MELKQ14680 651 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 MFSD13AQ14CX5 517 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 ATP1A1-AS1Q5TC04 95 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 USP43Q70EL4 1123 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 SLC39A7Q92504 469 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 UFD1Q92890 307 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 NXPE2Q96DL1 559 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 DCLRE1CQ96SD1 692 aaKnown RBP12.38□□□□□ -0.43
PTPRF-202ENST00000372405 TM9SF2Q99805 663 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 TTTY10Q9BZA0 68 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 CHST11Q9NPF2 352 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 SERINC1Q9NRX5 453 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 RYDENQ9NUL5 291 aaKnown RBP12.38□□□□□ -0.43
PTPRF-202ENST00000372405 ALKBH4Q9NXW9 302 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 STMN3Q9NZ72 180 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 FAM186AA6NE01 2351 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 FAM47E-STBD1D6RA91 191 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 AKAP8O43823 692 aaKnown RBP12.38□□□□□ -0.43
PTPRF-202ENST00000372405 SNX4O95219 450 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 OR2T7P0C7T2 308 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 CYB561P49447 251 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 DSCR4P56555 118 aaPredicted RBP12.38□□□□□ -0.43
PTPRF-202ENST00000372405 OR12D2P58182 307 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 ACTC1P68032 377 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 ACTA1P68133 377 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 SELENBP1Q13228 472 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.38□□□□□ -0.431e-7■□□□□ 10.8
PTPRF-202ENST00000372405 EEF1A1P5Q5VTE0 462 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 JMJD6Q6NYC1 403 aaPredicted RBP12.38□□□□□ -0.43
PTPRF-202ENST00000372405 NHLRC1Q6VVB1 395 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 TMPRSS11AQ6ZMR5 421 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 SLC35F2Q8IXU6 374 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 OR2T27Q8NH04 317 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 C5orf34Q96MH7 638 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 DACH2Q96NX9 599 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 NUAK2Q9H093 628 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 SLC24A3Q9HC58 644 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 EXOSC4Q9NPD3 245 aaKnown RBP12.38□□□□□ -0.43
PTPRF-202ENST00000372405 BABAM2Q9NXR7 383 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 B3GAT1Q9P2W7 334 aa12.38□□□□□ -0.43
PTPRF-202ENST00000372405 PRSS37A4D1T9 235 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 LRRC3CA6NJW4 275 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 PRR32B1ATL7 298 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 ZNF814B7Z6K7 855 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 GPANK1O95872 356 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 P04436 131 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 CELP19835 753 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 KLK2P20151 261 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 CD82P27701 267 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 GABRA5P31644 462 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 SFTPDP35247 375 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 CD96P40200 585 aa12.37□□□□□ -0.43
PTPRF-202ENST00000372405 SERPINB10P48595 397 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms