RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 C5orf46Q6UWT4 87 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 RBMS3Q6XE24 437 aaKnown RBP11.86□□□□□ -0.51
VPS29-201ENST00000360579 ZNF836Q6ZNA1 936 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 TMEM123Q8N131 208 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 LRRC17Q8N6Y2 441 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 ZDHHC22Q8N966 263 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 ZNF837Q96EG3 531 aaPredicted RBP11.86□□□□□ -0.51
VPS29-201ENST00000360579 OR2M2Q96R28 347 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 PANX1Q96RD7 426 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 TMPRSS13Q9BYE2 586 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 B3GAT2Q9NPZ5 323 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 SLC17A7Q9P2U7 560 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 B3GAT1Q9P2W7 334 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 P2RX2Q9UBL9 471 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 SLC7A8Q9UHI5 535 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 DUSP13Q9UII6 198 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 DSPPQ9NZW4 1301 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 A0A0G2JK05 382 aa11.85□□□□□ -0.51
VPS29-201ENST00000360579 LOC102725191A0A1B0GVB3 256 aa11.85□□□□□ -0.51
VPS29-201ENST00000360579 M0R3G1 203 aa11.85□□□□□ -0.51
VPS29-201ENST00000360579 PLPP2O43688 288 aa11.85□□□□□ -0.51
VPS29-201ENST00000360579 FZD7O75084 574 aa11.85□□□□□ -0.51
VPS29-201ENST00000360579 NCR1O76036 304 aa11.85□□□□□ -0.51
VPS29-201ENST00000360579 SEC14L2O76054 403 aa11.85□□□□□ -0.51
VPS29-201ENST00000360579 KRT75O95678 551 aa11.85□□□□□ -0.51
VPS29-201ENST00000360579 NAT2P11245 290 aa11.85□□□□□ -0.51
VPS29-201ENST00000360579 RPS5P46782 204 aaKnown RBP11.85□□□□□ -0.51
VPS29-201ENST00000360579 TEKQ02763 1124 aa11.85□□□□□ -0.51
VPS29-201ENST00000360579 MAD2L1BPQ15013 274 aaPredicted RBP11.85□□□□□ -0.51
VPS29-201ENST00000360579 PDCD2Q16342 344 aaPredicted RBP11.85□□□□□ -0.51
VPS29-201ENST00000360579 NKPD1Q17RQ9 610 aa11.85□□□□□ -0.51
VPS29-201ENST00000360579 PCGF3Q3KNV8 242 aa11.85□□□□□ -0.51
VPS29-201ENST00000360579 TREML4Q6UXN2 200 aa11.85□□□□□ -0.51
VPS29-201ENST00000360579 ZNF813Q6ZN06 617 aa11.85□□□□□ -0.51
VPS29-201ENST00000360579 ZNF627Q7L945 461 aa11.85□□□□□ -0.51
VPS29-201ENST00000360579 LRP11Q86VZ4 500 aa11.85□□□□□ -0.51
VPS29-201ENST00000360579 VRK2Q86Y07 508 aa11.85□□□□□ -0.51
VPS29-201ENST00000360579 TREML1Q86YW5 311 aa11.85□□□□□ -0.51
VPS29-201ENST00000360579 LRRC34Q8IZ02 419 aa11.85□□□□□ -0.51
VPS29-201ENST00000360579 KIF18AQ8NI77 898 aa11.85□□□□□ -0.51
VPS29-201ENST00000360579 LRR1Q96L50 414 aa11.85□□□□□ -0.51
VPS29-201ENST00000360579 PTDSS2Q9BVG9 487 aa11.85□□□□□ -0.51
VPS29-201ENST00000360579 ZMAT3Q9HA38 289 aaKnown RBP11.85□□□□□ -0.51
VPS29-201ENST00000360579 ESM1Q9NQ30 184 aa11.85□□□□□ -0.51
VPS29-201ENST00000360579 ZNF232Q9UNY5 417 aa11.85□□□□□ -0.51
VPS29-201ENST00000360579 ZNF443Q9Y2A4 671 aaPredicted RBP11.85□□□□□ -0.51
VPS29-201ENST00000360579 SLC22A23A1A5C7 686 aa11.84□□□□□ -0.51
VPS29-201ENST00000360579 PRSS23O95084 383 aa11.84□□□□□ -0.51
VPS29-201ENST00000360579 UBL3O95164 117 aa11.84□□□□□ -0.51
VPS29-201ENST00000360579 MYZAPP0CAP1 466 aa11.84□□□□□ -0.51
VPS29-201ENST00000360579 PTDSS1P48651 473 aaKnown RBP11.84□□□□□ -0.51
VPS29-201ENST00000360579 CRISP3P54108 245 aa11.84□□□□□ -0.51
VPS29-201ENST00000360579 EGR4Q05215 589 aa11.84□□□□□ -0.51
VPS29-201ENST00000360579 PIGFQ07326 219 aa11.84□□□□□ -0.51
VPS29-201ENST00000360579 FAM69AQ5T7M9 428 aa11.84□□□□□ -0.51
VPS29-201ENST00000360579 TMEM154Q6P9G4 183 aa11.84□□□□□ -0.51
VPS29-201ENST00000360579 ZNF621Q6ZSS3 439 aa11.84□□□□□ -0.51
VPS29-201ENST00000360579 H1FNTQ75WM6 255 aaPredicted RBP11.84□□□□□ -0.51
VPS29-201ENST00000360579 NET1Q7Z628 596 aaPredicted RBP11.84□□□□□ -0.51
VPS29-201ENST00000360579 C20orf196Q8IYI0 205 aa11.84□□□□□ -0.51
VPS29-201ENST00000360579 EIF1ADQ8N9N8 165 aaKnown RBP11.84□□□□□ -0.51
VPS29-201ENST00000360579 ADPRHL1Q8NDY3 354 aa11.84□□□□□ -0.51
VPS29-201ENST00000360579 TCP10LQ8TDR4 215 aa11.84□□□□□ -0.51
VPS29-201ENST00000360579 SNX33Q8WV41 574 aa11.84□□□□□ -0.51
VPS29-201ENST00000360579 SLC35B4Q969S0 331 aa11.84□□□□□ -0.51
VPS29-201ENST00000360579 PPP1R36Q96LQ0 422 aa11.84□□□□□ -0.51
VPS29-201ENST00000360579 ZNF75AQ96N20 296 aa11.84□□□□□ -0.51
VPS29-201ENST00000360579 C12orf10Q9HB07 376 aa11.84□□□□□ -0.51
VPS29-201ENST00000360579 MYEF2Q9P2K5 600 aaKnown RBP11.84□□□□□ -0.51
VPS29-201ENST00000360579 POFUT2Q9Y2G5 429 aa11.84□□□□□ -0.51
VPS29-201ENST00000360579 CORINQ9Y5Q5 1042 aa11.84□□□□□ -0.51
VPS29-201ENST00000360579 CMYA5Q8N3K9 4069 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 C17orf100A8MU93 164 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 M0R082 166 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 TRAF3IP2O43734 574 aaPredicted RBP11.83□□□□□ -0.52
VPS29-201ENST00000360579 DEAF1O75398 565 aaPredicted RBP11.83□□□□□ -0.52
VPS29-201ENST00000360579 C1QCP02747 245 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 BPGMP07738 259 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 PRG2P13727 222 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 ADRA2CP18825 462 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 CRYBB2P43320 205 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 GIPRP48546 466 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 RAB1AP62820 205 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 MVKQ03426 396 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 ZP4Q12836 540 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 MFSD13AQ14CX5 517 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 CHI3L2Q15782 390 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 COX20Q5RI15 118 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 RGS7BPQ6MZT1 257 aaPredicted RBP11.83□□□□□ -0.52
VPS29-201ENST00000360579 UEVLDQ8IX04 471 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 KIRREL3Q8IZU9 778 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 ZNF417Q8TAU3 575 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 PNPT1Q8TCS8 783 aaKnown RBP11.83□□□□□ -0.52
VPS29-201ENST00000360579 SLC38A4Q969I6 547 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 KTI12Q96EK9 354 aaPredicted RBP11.83□□□□□ -0.52
VPS29-201ENST00000360579 TIMD4Q96H15 378 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 ZNF587Q96SQ5 575 aaPredicted RBP11.83□□□□□ -0.52
VPS29-201ENST00000360579 RHOXF2Q9BQY4 288 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 SPATA9Q9BWV2 254 aa11.83□□□□□ -0.52
VPS29-201ENST00000360579 C7orf69Q9H7B7 122 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms