RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 OR6C70A6NIJ9 312 aa18.89■□□□□ 0.61
CCDC88B-203ENST00000359902 KHNYNO15037 678 aaKnown RBP18.89■□□□□ 0.61
CCDC88B-203ENST00000359902 RPP14O95059 124 aaKnown RBP18.89■□□□□ 0.61
CCDC88B-203ENST00000359902 BGLAPP02818 100 aa18.89■□□□□ 0.61
CCDC88B-203ENST00000359902 GLB1P16278 677 aa18.89■□□□□ 0.61
CCDC88B-203ENST00000359902 DGCR2P98153 550 aa18.89■□□□□ 0.61
CCDC88B-203ENST00000359902 PLCXD2Q0VAA5 305 aa18.89■□□□□ 0.61
CCDC88B-203ENST00000359902 LIPNQ5VXI9 398 aa18.89■□□□□ 0.61
CCDC88B-203ENST00000359902 OR1N1Q8NGS0 311 aa18.89■□□□□ 0.61
CCDC88B-203ENST00000359902 OR2T4Q8NH00 348 aa18.89■□□□□ 0.61
CCDC88B-203ENST00000359902 ZNF671Q8TAW3 534 aa18.89■□□□□ 0.61
CCDC88B-203ENST00000359902 LGALS14Q8TCE9 139 aa18.89■□□□□ 0.61
CCDC88B-203ENST00000359902 MKL2Q9ULH7 1088 aa18.89■□□□□ 0.61
CCDC88B-203ENST00000359902 A0A0C4DFX4 3053 aa18.89■□□□□ 0.61
CCDC88B-203ENST00000359902 RP1P56715 2156 aa18.89■□□□□ 0.61
CCDC88B-203ENST00000359902 TVP23AA6NH52 213 aa18.89■□□□□ 0.61
CCDC88B-203ENST00000359902 EIF4E2O60573 245 aaKnown RBP18.89■□□□□ 0.61
CCDC88B-203ENST00000359902 SMAD2Q15796 467 aaKnown RBP18.89■□□□□ 0.61
CCDC88B-203ENST00000359902 ARHGAP40Q5TG30 622 aa18.89■□□□□ 0.61
CCDC88B-203ENST00000359902 GPR139Q6DWJ6 353 aa18.89■□□□□ 0.61
CCDC88B-203ENST00000359902 OMA1Q96E52 524 aa18.89■□□□□ 0.61
CCDC88B-203ENST00000359902 DNAJA3Q96EY1 480 aa18.89■□□□□ 0.61
CCDC88B-203ENST00000359902 SLC25A18Q9H1K4 315 aa18.89■□□□□ 0.61
CCDC88B-203ENST00000359902 TAS2R5Q9NYW4 299 aa18.89■□□□□ 0.61
CCDC88B-203ENST00000359902 UNC13CQ8NB66 2214 aa18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 A0A1B0GX78 115 aa18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 ABHD16AO95870 558 aa18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 ABCD3P28288 659 aa18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 RNASE12Q5GAN4 147 aaKnown RBP18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 BICRALQ6AI39 1079 aa18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 ASCC1Q8N9N2 400 aaKnown RBP18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 C7orf57Q8NEG2 295 aa18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 CMTM3Q96MX0 182 aa18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 TMEM246Q9BRR3 403 aa18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 TBL1XR1Q9BZK7 514 aa18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 TSPAN10Q9H1Z9 355 aaPredicted RBP18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 MCUBQ9NWR8 336 aa18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 FRRS1LQ9P0K9 344 aa18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 COPS7AQ9UBW8 275 aa18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 NUP210LQ5VU65 1888 aa18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 CEP192Q8TEP8 1941 aa18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 COL5A1P20908 1838 aaPredicted RBP18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 IFITM5A6NNB3 132 aa18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 PDCD5O14737 125 aa18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 CDC40O60508 579 aaKnown RBP eCLIP18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 NUDT14O95848 222 aa18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 GIMD1P0DJR0 217 aa18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 STARD6P59095 220 aa18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 UBE2NLQ5JXB2 153 aa18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 EEF1A1P5Q5VTE0 462 aa18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 THOC7Q6I9Y2 204 aaKnown RBP18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 SLC29A4Q7RTT9 530 aa18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 FAM220AQ7Z4H9 259 aa18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 LIX1LQ8IVB5 337 aa18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 CMTM4Q8IZR5 234 aa18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 TOMM5Q8N4H5 51 aa18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 NDEL1Q9GZM8 345 aa18.88■□□□□ 0.61
CCDC88B-203ENST00000359902 TRAV36DV7A0A075B6V5 113 aa18.87■□□□□ 0.61
CCDC88B-203ENST00000359902 AKR7A3O95154 331 aa18.87■□□□□ 0.61
CCDC88B-203ENST00000359902 RENP00797 406 aa18.87■□□□□ 0.61
CCDC88B-203ENST00000359902 PNLIPRP2P54317 469 aa18.87■□□□□ 0.61
CCDC88B-203ENST00000359902 ALKBH1Q13686 389 aaKnown RBP18.87■□□□□ 0.61
CCDC88B-203ENST00000359902 HES5Q5TA89 166 aa18.87■□□□□ 0.61
CCDC88B-203ENST00000359902 BAIAP2L2Q6UXY1 529 aa18.87■□□□□ 0.61
CCDC88B-203ENST00000359902 SIAH3Q8IW03 269 aa18.87■□□□□ 0.61
CCDC88B-203ENST00000359902 BMPERQ8N8U9 685 aa18.87■□□□□ 0.61
CCDC88B-203ENST00000359902 ZNF441Q8N8Z8 693 aa18.87■□□□□ 0.61
CCDC88B-203ENST00000359902 CEP76Q8TAP6 659 aa18.87■□□□□ 0.61
CCDC88B-203ENST00000359902 ADAMTS14Q8WXS8 1223 aa18.87■□□□□ 0.61
CCDC88B-203ENST00000359902 DNASE2BQ8WZ79 361 aa18.87■□□□□ 0.61
CCDC88B-203ENST00000359902 ZNF501Q96CX3 271 aaPredicted RBP18.87■□□□□ 0.61
CCDC88B-203ENST00000359902 SYT4Q9H2B2 425 aa18.87■□□□□ 0.61
CCDC88B-203ENST00000359902 WDR76Q9H967 626 aa18.87■□□□□ 0.61
CCDC88B-203ENST00000359902 AIPO00170 330 aa18.86■□□□□ 0.61
CCDC88B-203ENST00000359902 ADRB1P08588 477 aa18.86■□□□□ 0.61
CCDC88B-203ENST00000359902 PRKCAP17252 672 aa18.86■□□□□ 0.61
CCDC88B-203ENST00000359902 PGCP20142 388 aa18.86■□□□□ 0.61
CCDC88B-203ENST00000359902 GPLD1P80108 840 aa18.86■□□□□ 0.61
CCDC88B-203ENST00000359902 EFR3AQ14156 821 aa18.86■□□□□ 0.61
CCDC88B-203ENST00000359902 Q5BKY6 102 aa18.86■□□□□ 0.61
CCDC88B-203ENST00000359902 FAM199XQ6PEV8 388 aaPredicted RBP18.86■□□□□ 0.61
CCDC88B-203ENST00000359902 LANCL3Q6ZV70 420 aa18.86■□□□□ 0.61
CCDC88B-203ENST00000359902 PRSS45Q7RTY3 260 aa18.86■□□□□ 0.61
CCDC88B-203ENST00000359902 ZNF433Q8N7K0 673 aaPredicted RBP18.86■□□□□ 0.61
CCDC88B-203ENST00000359902 OR5AK2Q8NH90 309 aa18.86■□□□□ 0.61
CCDC88B-203ENST00000359902 AKAP1Q92667 903 aaKnown RBP eCLIP18.86■□□□□ 0.61
CCDC88B-203ENST00000359902 FGF21Q9NSA1 209 aa18.86■□□□□ 0.61
CCDC88B-203ENST00000359902 LAMP5Q9UJQ1 280 aa18.86■□□□□ 0.61
CCDC88B-203ENST00000359902 A0A0A6YYJ9 748 aa18.86■□□□□ 0.61
CCDC88B-203ENST00000359902 IQCJ-SCHIP1C9J366 451 aaPredicted RBP18.86■□□□□ 0.61
CCDC88B-203ENST00000359902 BCAT2O15382 392 aaPredicted RBP18.86■□□□□ 0.61
CCDC88B-203ENST00000359902 ARHGEF9O43307 516 aa18.86■□□□□ 0.61
CCDC88B-203ENST00000359902 GSTZ1O43708 216 aaPredicted RBP18.86■□□□□ 0.61
CCDC88B-203ENST00000359902 GP1BBP13224 206 aa18.86■□□□□ 0.61
CCDC88B-203ENST00000359902 AFF3P51826 1226 aaKnown RBP18.86■□□□□ 0.61
CCDC88B-203ENST00000359902 PRSS42Q7Z5A4 293 aa18.86■□□□□ 0.61
CCDC88B-203ENST00000359902 PM20D2Q8IYS1 436 aa18.86■□□□□ 0.61
CCDC88B-203ENST00000359902 PTDSS2Q9BVG9 487 aa18.86■□□□□ 0.61
CCDC88B-203ENST00000359902 ING3Q9NXR8 418 aa18.86■□□□□ 0.61
CCDC88B-203ENST00000359902 CTSFQ9UBX1 484 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms