RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 GALEQ14376 348 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 EBPQ15125 230 aaKnown RBP12.64□□□□□ -0.39
TRIM4-201ENST00000349062 FCN2Q15485 313 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 ZNF141Q15928 474 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 MEP1BQ16820 701 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 TOR2AQ5JU69 321 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 HES5Q5TA89 166 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 PRAMEF20Q5VT98 475 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 ABHD4Q8TB40 342 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 ZNF721Q8TF20 911 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 JSRP1Q96MG2 331 aaPredicted RBP12.64□□□□□ -0.39
TRIM4-201ENST00000349062 SLC46A1Q96NT5 459 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 ALG12Q9BV10 488 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 C12orf4Q9NQ89 552 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 MED17Q9NVC6 651 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 KLRF1Q9NZS2 232 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 EPHA6Q9UF33 1036 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 ZMIZ1Q9ULJ6 1067 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 ARID1AO14497 2285 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 IGKV1D-42A0A075B6H8 117 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 TRBV11-1A0A0K0K1C0 115 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 LOC105371267A0A1B0GV96 52 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 TEX46H3BTG2 121 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 EIF1AYO14602 144 aaKnown RBP12.64□□□□□ -0.39
TRIM4-201ENST00000349062 NUPL2O15504 423 aaKnown RBP12.64□□□□□ -0.39
TRIM4-201ENST00000349062 OR7A10O76100 309 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 F10P00742 488 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 SPI1P17947 270 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 ELAVL1Q15717 326 aaKnown RBP12.64□□□□□ -0.39
TRIM4-201ENST00000349062 GLYR1Q49A26 553 aaPredicted RBP12.64□□□□□ -0.39
TRIM4-201ENST00000349062 NKAIN1Q4KMZ8 207 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 KLHL26Q53HC5 615 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 SLC6A19Q695T7 634 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 VASNQ6EMK4 673 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 TCEAL6Q6IPX3 200 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 GDPGP1Q6ZNW5 385 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 OR4M2Q8NGB6 313 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 THAP4Q8WY91 577 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 TCEAL3Q969E4 200 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 ARPC5LQ9BPX5 153 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 RNF32Q9H0A6 362 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 OCIAD1Q9NX40 245 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 SPATA2Q9UM82 520 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 ZNF337Q9Y3M9 751 aa12.64□□□□□ -0.39
TRIM4-201ENST00000349062 A0A1W2PQM1 296 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 K7ESF4 209 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 GP1BBP13224 206 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 IL11P20809 199 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 PSMD4P55036 377 aaKnown RBP12.63□□□□□ -0.39
TRIM4-201ENST00000349062 STARD6P59095 220 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 ETFDHQ16134 617 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 MRGPREQ86SM8 312 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 AP3S1Q92572 193 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 WWTR1Q9GZV5 400 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 WDR76Q9H967 626 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 ERVMER34-1Q9H9K5 563 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 ZC4H2Q9NQZ6 224 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 ANKRD10Q9NXR5 420 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 EFCAB7A8K855 629 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 CLPSP04118 112 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 ELK1P19419 428 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 FOXK1P85037 733 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 COL19A1Q14993 1142 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 ESCO2Q56NI9 601 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 SLC25A30Q5SVS4 291 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 LCN10Q6JVE6 187 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 PLCZ1Q86YW0 608 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 CRB3Q9BUF7 120 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 ENAMQ9NRM1 1142 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 RBFOX1Q9NWB1 397 aaKnown RBP12.63□□□□□ -0.39
TRIM4-201ENST00000349062 RPH3AQ9Y2J0 694 aaPredicted RBP12.63□□□□□ -0.39
TRIM4-201ENST00000349062 PHF3Q92576 2039 aaKnown RBP12.63□□□□□ -0.39
TRIM4-201ENST00000349062 TRDV1A0A1B0GX56 115 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 XKRYO14609 159 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 FMO6PO60774 539 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 GBX2P52951 348 aaPredicted RBP12.63□□□□□ -0.39
TRIM4-201ENST00000349062 RRAS2P62070 204 aaPredicted RBP12.63□□□□□ -0.39
TRIM4-201ENST00000349062 LGALS3BPQ08380 585 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 SKP2Q13309 424 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 TOMM20Q15388 145 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 TMEM44Q2T9K0 475 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 PAPD4Q6PIY7 484 aaKnown RBP12.63□□□□□ -0.39
TRIM4-201ENST00000349062 DNAAF1Q8NEP3 725 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 OR4D9Q8NGE8 314 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 ZNF501Q96CX3 271 aaPredicted RBP12.63□□□□□ -0.39
TRIM4-201ENST00000349062 C5orf34Q96MH7 638 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 MYEF2Q9P2K5 600 aaKnown RBP12.63□□□□□ -0.39
TRIM4-201ENST00000349062 ING4Q9UNL4 249 aa12.63□□□□□ -0.39
TRIM4-201ENST00000349062 EXOGQ9Y2C4 368 aaKnown RBP12.63□□□□□ -0.39
TRIM4-201ENST00000349062 EEF1E1O43324 174 aaKnown RBP12.62□□□□□ -0.39
TRIM4-201ENST00000349062 CELA2AP08217 269 aa12.62□□□□□ -0.39
TRIM4-201ENST00000349062 GIMD1P0DJR0 217 aa12.62□□□□□ -0.39
TRIM4-201ENST00000349062 PTHLHP12272 177 aa12.62□□□□□ -0.39
TRIM4-201ENST00000349062 SRP9P49458 86 aaKnown RBP12.62□□□□□ -0.39
TRIM4-201ENST00000349062 ZNF81P51508 661 aa12.62□□□□□ -0.39
TRIM4-201ENST00000349062 EGR4Q05215 589 aa12.62□□□□□ -0.39
TRIM4-201ENST00000349062 RPL13AP3Q6NVV1 102 aa12.62□□□□□ -0.39
TRIM4-201ENST00000349062 OR52N1Q8NH53 320 aa12.62□□□□□ -0.39
TRIM4-201ENST00000349062 PPP1R14AQ96A00 147 aa12.62□□□□□ -0.39
TRIM4-201ENST00000349062 PELI1Q96FA3 418 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms