RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 PSMF1Q92530 271 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 C4orf36Q96KX1 117 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 C5orf34Q96MH7 638 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 TXNIPQ9H3M7 391 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 PCDHGB7Q9Y5F8 929 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 PMF1-BGLAPU3KQ54 211 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 A0A087WZY1 265 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 A0A1W2PRG6 482 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 DCTN6O00399 190 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 MT-ND5P03915 603 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 HLA-DOBP13765 273 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 ADH6P28332 368 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 GABRA5P31644 462 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 SFTPDP35247 375 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 SELENBP1Q13228 472 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 MELKQ14680 651 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 H1FNTQ75WM6 255 aaPredicted RBP12.05□□□□□ -0.48
HMGB1-202ENST00000339872 TMPRSS12Q86WS5 348 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 ZNF248Q8NDW4 579 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 OR2T4Q8NH00 348 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 ZNF519Q8TB69 540 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 OR5B2Q96R09 309 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 UBL7Q96S82 380 aaPredicted RBP12.05□□□□□ -0.48
HMGB1-202ENST00000339872 TM9SF2Q99805 663 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 FAM117AQ9C073 453 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 SLIRPQ9GZT3 109 aaKnown RBP12.05□□□□□ -0.48
HMGB1-202ENST00000339872 CHST11Q9NPF2 352 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 TRIM36Q9NQ86 728 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 RYDENQ9NUL5 291 aaKnown RBP12.05□□□□□ -0.48
HMGB1-202ENST00000339872 BABAM2Q9NXR7 383 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 ALKBH4Q9NXW9 302 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 DKKL1Q9UK85 242 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 SF3B6Q9Y3B4 125 aaKnown RBP12.05□□□□□ -0.48
HMGB1-202ENST00000339872 ANKRD33BA6NCL7 494 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 MS4A18H0YCH9 400 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 J3QLW9 94 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 SLC30A4O14863 429 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 AKR7A3O95154 331 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 SNX4O95219 450 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 F10P00742 488 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 IGHMP01871 453 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 OR2T7P0C7T2 308 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 ZNF19P17023 458 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 RBMS1P29558 406 aaKnown RBP12.04□□□□□ -0.48
HMGB1-202ENST00000339872 DNASE1L1P49184 302 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 DSCR4P56555 118 aaPredicted RBP12.04□□□□□ -0.48
HMGB1-202ENST00000339872 OC90Q02509 493 aaPredicted RBP12.04□□□□□ -0.48
HMGB1-202ENST00000339872 MS4A18Q3C1V0 323 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 DCAF10Q5QP82 559 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 TIGD3Q6B0B8 471 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 OR6V1Q8N148 313 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 ZNF511Q8NB15 262 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 OR2T27Q8NH04 317 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 NTNG2Q96CW9 530 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 TMED9Q9BVK6 235 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 SACM1LQ9NTJ5 587 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 ZMIZ1Q9ULJ6 1067 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 MOKQ9UQ07 419 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 NOX1Q9Y5S8 564 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 A0A0G2JMM0 328 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 A0A1W2PNR3 127 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 A0A1W2PPB8 328 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 A0A1W2PRS3 328 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 KIR3DP1A8MWS1 328 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 ITGA3P26006 1051 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 SHC1P29353 583 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 CYB561P49447 251 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 OR12D2P58182 307 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 BDH1Q02338 343 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 MOGQ16653 247 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 RAET1LQ5VY80 246 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 GPALPP1Q8IXQ4 340 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 SLC25A43Q8WUT9 341 aaPredicted RBP12.04□□□□□ -0.48
HMGB1-202ENST00000339872 TMEM41AQ96HV5 264 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 TXNL4BQ9NX01 149 aaKnown RBP12.04□□□□□ -0.48
HMGB1-202ENST00000339872 STMN3Q9NZ72 180 aa12.04□□□□□ -0.48
HMGB1-202ENST00000339872 PRSS37A4D1T9 235 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 ZNF670-ZNF695F2Z2N8 137 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 TRIM3O75382 744 aaPredicted RBP12.03□□□□□ -0.48
HMGB1-202ENST00000339872 ACTA2P62736 377 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 ACTG2P63267 376 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 POU3F1Q03052 451 aaPredicted RBP12.03□□□□□ -0.48
HMGB1-202ENST00000339872 ZP4Q12836 540 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 TGIF1Q15583 401 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 CRTC2Q53ET0 693 aaPredicted RBP12.03□□□□□ -0.48
HMGB1-202ENST00000339872 TP53I3Q53FA7 332 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 C22orf42Q6IC83 251 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 JMJD6Q6NYC1 403 aaPredicted RBP12.03□□□□□ -0.48
HMGB1-202ENST00000339872 GTPBP8Q8N3Z3 284 aaPredicted RBP12.03□□□□□ -0.48
HMGB1-202ENST00000339872 MCFD2Q8NI22 146 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 NUAK2Q9H093 628 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 CCDC59Q9P031 241 aaKnown RBP12.03□□□□□ -0.48
HMGB1-202ENST00000339872 TEKT2Q9UIF3 430 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 COPS3Q9UNS2 423 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 PTPRBP23467 1997 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 CDRT15L2A8MXV6 281 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 NPIPA5E9PKD4 350 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 MAGEB4O15481 346 aaPredicted RBP12.03□□□□□ -0.48
HMGB1-202ENST00000339872 CD82P27701 267 aa12.03□□□□□ -0.48
HMGB1-202ENST00000339872 OPRL1P41146 370 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms