RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 FOXC2Q99958 501 aa13.89□□□□□ -0.19
CLN3-201ENST00000333496 LINC00470Q9BZP3 86 aa13.89□□□□□ -0.19
CLN3-201ENST00000333496 SLC19A3Q9BZV2 496 aa13.89□□□□□ -0.19
CLN3-201ENST00000333496 CXXC4Q9H2H0 198 aa13.89□□□□□ -0.19
CLN3-201ENST00000333496 UBTD1Q9HAC8 227 aa13.89□□□□□ -0.19
CLN3-201ENST00000333496 EGFL7Q9UHF1 273 aa13.89□□□□□ -0.19
CLN3-201ENST00000333496 EDARQ9UNE0 448 aa13.89□□□□□ -0.19
CLN3-201ENST00000333496 LRCH1Q9Y2L9 728 aa13.89□□□□□ -0.19
CLN3-201ENST00000333496 MAP1AP78559 2803 aaPredicted RBP13.89□□□□□ -0.19
CLN3-201ENST00000333496 J3KTA2 159 aa13.88□□□□□ -0.19
CLN3-201ENST00000333496 ZNF682O95780 498 aa13.88□□□□□ -0.19
CLN3-201ENST00000333496 SERPINA1P01009 418 aa13.88□□□□□ -0.19
CLN3-201ENST00000333496 ASAH2BP0C7U1 165 aa13.88□□□□□ -0.19
CLN3-201ENST00000333496 IL1RL1Q01638 556 aa13.88□□□□□ -0.19
CLN3-201ENST00000333496 BSPH1Q075Z2 132 aa13.88□□□□□ -0.19
CLN3-201ENST00000333496 FOXD4Q12950 439 aaPredicted RBP13.88□□□□□ -0.19
CLN3-201ENST00000333496 C1DQ13901 141 aaKnown RBP13.88□□□□□ -0.19
CLN3-201ENST00000333496 ACKR1Q16570 336 aa13.88□□□□□ -0.19
CLN3-201ENST00000333496 PGM2L1Q6PCE3 622 aa13.88□□□□□ -0.19
CLN3-201ENST00000333496 SPNS3Q6ZMD2 512 aa13.88□□□□□ -0.19
CLN3-201ENST00000333496 SLC46A3Q7Z3Q1 461 aa13.88□□□□□ -0.19
CLN3-201ENST00000333496 UEVLDQ8IX04 471 aa13.88□□□□□ -0.19
CLN3-201ENST00000333496 TMEM123Q8N131 208 aa13.88□□□□□ -0.19
CLN3-201ENST00000333496 FAM156AQ8NDB6 213 aa13.88□□□□□ -0.19
CLN3-201ENST00000333496 C1orf162Q8NEQ5 155 aaPredicted RBP13.88□□□□□ -0.19
CLN3-201ENST00000333496 PFN4Q8NHR9 129 aa13.88□□□□□ -0.19
CLN3-201ENST00000333496 BOD1Q96IK1 185 aa13.88□□□□□ -0.19
CLN3-201ENST00000333496 TXNDC15Q96J42 360 aa13.88□□□□□ -0.19
CLN3-201ENST00000333496 PRRC1Q96M27 445 aa13.88□□□□□ -0.19
CLN3-201ENST00000333496 OR2M2Q96R28 347 aa13.88□□□□□ -0.19
CLN3-201ENST00000333496 EMC6Q9BV81 110 aa13.88□□□□□ -0.19
CLN3-201ENST00000333496 ESRP2Q9H6T0 727 aaKnown RBP13.88□□□□□ -0.19
CLN3-201ENST00000333496 FKRPQ9H9S5 495 aa13.88□□□□□ -0.19
CLN3-201ENST00000333496 NGBQ9NPG2 151 aa13.88□□□□□ -0.19
CLN3-201ENST00000333496 NANSQ9NR45 359 aa13.88□□□□□ -0.19
CLN3-201ENST00000333496 MED29Q9NX70 200 aa13.88□□□□□ -0.19
CLN3-201ENST00000333496 TAS2R5Q9NYW4 299 aa13.88□□□□□ -0.19
CLN3-201ENST00000333496 ADA2Q9NZK5 511 aa13.88□□□□□ -0.19
CLN3-201ENST00000333496 OR6C65A6NJZ3 312 aa13.87□□□□□ -0.19
CLN3-201ENST00000333496 FFAR1O14842 300 aa13.87□□□□□ -0.19
CLN3-201ENST00000333496 MT-ND1P03886 318 aa13.87□□□□□ -0.19
CLN3-201ENST00000333496 ADORA3P0DMS8 318 aa13.87□□□□□ -0.19
CLN3-201ENST00000333496 THRBP10828 461 aa13.87□□□□□ -0.19
CLN3-201ENST00000333496 CDH2P19022 906 aaPredicted RBP13.87□□□□□ -0.19
CLN3-201ENST00000333496 YAP1P46937 504 aaKnown RBP13.87□□□□□ -0.19
CLN3-201ENST00000333496 LSM11P83369 360 aaKnown RBP eCLIP13.87□□□□□ -0.19
CLN3-201ENST00000333496 POU3F1Q03052 451 aaPredicted RBP13.87□□□□□ -0.19
CLN3-201ENST00000333496 DEFB113Q30KQ7 82 aa13.87□□□□□ -0.19
CLN3-201ENST00000333496 GLYATQ6IB77 296 aa13.87□□□□□ -0.19
CLN3-201ENST00000333496 TSEN54Q7Z6J9 526 aaKnown RBP13.87□□□□□ -0.19
CLN3-201ENST00000333496 PXKQ7Z7A4 578 aa13.87□□□□□ -0.19
CLN3-201ENST00000333496 TMEM239Q8WW34 195 aa13.87□□□□□ -0.19
CLN3-201ENST00000333496 FAM162AQ96A26 154 aa13.87□□□□□ -0.19
CLN3-201ENST00000333496 ZNF837Q96EG3 531 aaPredicted RBP13.87□□□□□ -0.19
CLN3-201ENST00000333496 HSH2DQ96JZ2 352 aa13.87□□□□□ -0.19
CLN3-201ENST00000333496 SLC17A5Q9NRA2 495 aa13.87□□□□□ -0.19
CLN3-201ENST00000333496 C20orf141Q9NUB4 165 aa13.87□□□□□ -0.19
CLN3-201ENST00000333496 SLC7A8Q9UHI5 535 aa13.87□□□□□ -0.19
CLN3-201ENST00000333496 ARID1AO14497 2285 aa13.87□□□□□ -0.19
CLN3-201ENST00000333496 ZNF587BE7ETH6 402 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 C11orf98E9PRG8 122 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 KRT33AO76009 404 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 PDE5AO76074 875 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 AHCYP23526 432 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 RBM34P42696 430 aaKnown RBP13.86□□□□□ -0.19
CLN3-201ENST00000333496 TGFBR3Q03167 851 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 ZP4Q12836 540 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 FXNQ16595 210 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 IFI44LQ53G44 452 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 PHYHD1Q5SRE7 291 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 C1orf146Q5VVC0 180 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 SSX8Q7RTT4 187 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 ABHD12BQ7Z5M8 362 aaPredicted RBP13.86□□□□□ -0.19
CLN3-201ENST00000333496 C17orf78Q8N4C9 275 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 IGFBPL1Q8WX77 278 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 GEMIN6Q8WXD5 167 aaKnown RBP13.86□□□□□ -0.19
CLN3-201ENST00000333496 NEUROG1Q92886 237 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 ALPK1Q96QP1 1244 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 CDRT15Q96T59 188 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 NELFAQ9H3P2 528 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 MAN2C1Q9NTJ4 1040 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 RHCGQ9UBD6 479 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 CD300AQ9UGN4 299 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 ZNF229Q9UJW7 825 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 RNF115Q9Y4L5 304 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 NOX1Q9Y5S8 564 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 HIVEP1P15822 2718 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 SLC35F4A4IF30 521 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 RPL36A-HNRNPH2H7BZ11 118 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 SLC43A1O75387 559 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 PRSS23O95084 383 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 IGF2P01344 180 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 IFNW1P05000 195 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 CD3EP07766 207 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 HSD17B1P14061 328 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 TCN1P20061 433 aaPredicted RBP13.86□□□□□ -0.19
CLN3-201ENST00000333496 ROR2Q01974 943 aaKnown RBP13.86□□□□□ -0.19
CLN3-201ENST00000333496 ST3GAL3Q11203 375 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 HIKESHIQ53FT3 197 aa13.86□□□□□ -0.19
CLN3-201ENST00000333496 FKBP9P1Q75LS8 142 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms