RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 DOCK9Q9BZ29 2069 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 EML5Q05BV3 1969 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 TRAV8-7A0A075B6U6 113 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 TRAV18A0A075B6X5 111 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 ZNF705EA8MWA4 302 aaPredicted RBP12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 F5H0A9 414 aaPredicted RBP12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 EIF1BO60739 113 aaKnown RBP12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 LYPD3O95274 346 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 FARS2O95363 451 aaKnown RBP12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 ANXA2P07355 339 aaKnown RBP12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 NGFRP08138 427 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 EIF1P41567 113 aaKnown RBP12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 PNLIPRP2P54317 469 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 DEFB103AP81534 67 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 RIPPLY1Q0D2K3 151 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 CCDC157Q569K6 752 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 AVPI1Q5T686 147 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 DHRS7BQ6IAN0 325 aaPredicted RBP12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 TMEM64Q6YI46 380 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 OR51D1Q8NGF3 324 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 PHOSPHO1Q8TCT1 267 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 TCEAL3Q969E4 200 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 C3orf49Q96BT1 292 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 NMNAT3Q96T66 252 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 ULBP3Q9BZM4 244 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 TREM1Q9NP99 234 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 MYEF2Q9P2K5 600 aaKnown RBP12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 A0A1B0GW55 424 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 PAPLNO95428 1278 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 OR4E1P0C645 316 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 DUX4L2P0CJ85 424 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 DUX4L3P0CJ86 424 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 DUX4L4P0CJ87 422 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 DUX4L5P0CJ88 424 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 DUX4L6P0CJ89 424 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 DUX4L7P0CJ90 424 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 CSF2RAP15509 400 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 BCL6P41182 706 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 ACTC1P68032 377 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 ACTA1P68133 377 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 OR2L13Q8N349 312 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 OR1J2Q8NGS2 313 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 OR6S1Q8NH40 331 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 CNN2Q99439 309 aaKnown RBP12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 PDCD10Q9BUL8 212 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 ACTRT3Q9BYD9 372 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 ZMAT3Q9HA38 289 aaKnown RBP12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 TCF7L1Q9HCS4 588 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 SDHAF3Q9NRP4 125 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 DUX4Q9UBX2 424 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 DTX4Q9Y2E6 619 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 PLEKHA6Q9Y2H5 1048 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 IER3IP1Q9Y5U9 82 aa12.29□□□□□ -0.44
CCDC88C-201ENST00000331194 SNAPINO95295 136 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 HIST1H1TP22492 207 aaPredicted RBP12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 RPS27P42677 84 aaKnown RBP12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 NR0B2Q15466 257 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 TGIF1Q15583 401 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 FAM109BQ6ICB4 259 aaPredicted RBP12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 FIGNL1Q6PIW4 674 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 FAM219AQ8IW50 185 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 SPAG16Q8N0X2 631 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 KCNRGQ8N5I3 272 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 ZNF614Q8N883 585 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 OR51A4Q8NGJ6 313 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 OR6N1Q8NGY5 312 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 FGF13Q92913 245 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 HSPA12BQ96MM6 686 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 KRCC1Q9NPI7 259 aaPredicted RBP12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 PRDM7Q9NQW5 492 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 MIOXQ9UGB7 285 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 STEAP1Q9UHE8 339 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 CES1P1Q9UKY3 287 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 LRRK1Q38SD2 2015 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 CACNA1IQ9P0X4 2223 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 A0A1W2PPE3 182 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 SCAMP1O15126 338 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 OR8G3PP0DMU2 310 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 AK4P27144 223 aaPredicted RBP12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 DLSTP36957 453 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 EEF1A1P68104 462 aaKnown RBP12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 DPPA4Q7L190 304 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 CDK20Q8IZL9 346 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 EID2Q8N6I1 236 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 EDARADDQ8WWZ3 215 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 NR4A3Q92570 626 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 RNF166Q96A37 237 aaPredicted RBP12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 TSSK2Q96PF2 358 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 MTHFD2LQ9H903 347 aaPredicted RBP12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 ZNF281Q9Y2X9 895 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 DNAJB6O75190 326 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 S100A9P06702 114 aaKnown RBP12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 RAB40ALP0C0E4 278 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 OR2T7P0C7T2 308 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 LAMP2P13473 410 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 EPHB3P54753 998 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 HABP2Q14520 560 aaPredicted RBP12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 GLT8D1Q68CQ7 371 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 SPRED2Q7Z698 418 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 ZNF511Q8NB15 262 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms