RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 PRG2P13727 222 aa12.71□□□□□ -0.37
CCDC88B-201ENST00000301897 ETFAP13804 333 aa12.71□□□□□ -0.37
CCDC88B-201ENST00000301897 LSP1P33241 339 aa12.71□□□□□ -0.37
CCDC88B-201ENST00000301897 LIMS1P48059 325 aa12.71□□□□□ -0.37
CCDC88B-201ENST00000301897 NME5P56597 212 aa12.71□□□□□ -0.37
CCDC88B-201ENST00000301897 GALK2Q01415 458 aa12.71□□□□□ -0.37
CCDC88B-201ENST00000301897 EGR4Q05215 589 aa12.71□□□□□ -0.37
CCDC88B-201ENST00000301897 MMEL1Q495T6 779 aa12.71□□□□□ -0.37
CCDC88B-201ENST00000301897 GKAP1Q5VSY0 366 aaPredicted RBP12.71□□□□□ -0.37
CCDC88B-201ENST00000301897 ZNF627Q7L945 461 aa12.71□□□□□ -0.37
CCDC88B-201ENST00000301897 ZNF417Q8TAU3 575 aa12.71□□□□□ -0.37
CCDC88B-201ENST00000301897 KTI12Q96EK9 354 aaPredicted RBP12.71□□□□□ -0.37
CCDC88B-201ENST00000301897 LRRC37BQ96QE4 947 aa12.71□□□□□ -0.37
CCDC88B-201ENST00000301897 ZNF587Q96SQ5 575 aaPredicted RBP12.71□□□□□ -0.37
CCDC88B-201ENST00000301897 SSU72Q9NP77 194 aaKnown RBP12.71□□□□□ -0.37
CCDC88B-201ENST00000301897 GPR160Q9UJ42 338 aa12.71□□□□□ -0.37
CCDC88B-201ENST00000301897 PCDHB10Q9UN67 800 aa12.71□□□□□ -0.37
CCDC88B-201ENST00000301897 CORINQ9Y5Q5 1042 aa12.71□□□□□ -0.37
CCDC88B-201ENST00000301897 TRAV36DV7A0A075B6V5 113 aa12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 TMEM89A2RUT3 159 aa12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 ZNF503-AS2A6NEH8 195 aa12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 ANP32DO95626 131 aa12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 RAB36O95755 333 aa12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 HLA-HP01893 362 aa12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 ALDOCP09972 364 aaKnown RBP12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 GAAP10253 952 aa12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 ZNF35P13682 527 aa12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 ZNF14P17017 642 aaPredicted RBP12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 IL12AP29459 219 aa12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 MVDP53602 400 aa12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 SELENOVP59797 346 aa12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 HILS1P60008 231 aa12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 STX3Q13277 289 aa12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 ZNF311Q5JNZ3 666 aa12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 ZNF813Q6ZN06 617 aa12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 MSANTD1Q6ZTZ1 278 aa12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 UEVLDQ8IX04 471 aa12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 C20orf196Q8IYI0 205 aa12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 OR6S1Q8NH40 331 aa12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 DNAJA4Q8WW22 397 aaPredicted RBP12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 ZNF837Q96EG3 531 aaPredicted RBP12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 TMEM19Q96HH6 336 aa12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 RAD21L1Q9H4I0 556 aa12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 RMND5AQ9H871 391 aa12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 TPT1P8Q9HAU6 139 aa12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 POFUT2Q9Y2G5 429 aa12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 GPR45Q9Y5Y3 372 aa12.7□□□□□ -0.38
CCDC88B-201ENST00000301897 TRPC5OSA6NMA1 111 aa12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 M0R3G1 203 aa12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 PPIHO43447 177 aaKnown RBP12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 TRAF3IP2O43734 574 aaPredicted RBP12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 PNPP00491 289 aa12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 HPXP02790 462 aa12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 IDO1P14902 403 aa12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 NQO1P15559 274 aaKnown RBP12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 EPHA1P21709 976 aa12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 GRPRP30550 384 aa12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 ALDH3B1P43353 468 aa12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 VSNL1P62760 191 aa12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 MYBPC1Q00872 1141 aa12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 FXNQ16595 210 aa12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 PEG10Q86TG7 708 aaKnown RBP12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 LSMEM1Q8N8F7 131 aa12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 SCAIQ8N9R8 606 aa12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 TAAR8Q969N4 342 aa12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 ITCHQ96J02 903 aa12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 EPYCQ99645 322 aa12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 SYT3Q9BQG1 590 aa12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 SUCNR1Q9BXA5 334 aa12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 NARFLQ9H6Q4 476 aa12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 BCL2L10Q9HD36 194 aa12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 SLC52A3Q9NQ40 469 aa12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 ZNF275Q9NSD4 429 aaPredicted RBP12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 SELENONQ9NZV5 590 aa12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 CHST2Q9Y4C5 530 aa12.69□□□□□ -0.38
CCDC88B-201ENST00000301897 SDHDO14521 159 aa12.68□□□□□ -0.38
CCDC88B-201ENST00000301897 SLC22A3O75751 556 aa12.68□□□□□ -0.38
CCDC88B-201ENST00000301897 SEC14L2O76054 403 aa12.68□□□□□ -0.38
CCDC88B-201ENST00000301897 UBL3O95164 117 aa12.68□□□□□ -0.38
CCDC88B-201ENST00000301897 EGR1P18146 543 aa12.68□□□□□ -0.38
CCDC88B-201ENST00000301897 COL8A2P25067 703 aa12.68□□□□□ -0.38
CCDC88B-201ENST00000301897 ARFIP2P53365 341 aa12.68□□□□□ -0.38
CCDC88B-201ENST00000301897 LMO4P61968 165 aa12.68□□□□□ -0.38
CCDC88B-201ENST00000301897 RPS26P11Q5JNZ5 115 aaPredicted RBP12.68□□□□□ -0.38
CCDC88B-201ENST00000301897 FAM91A1Q658Y4 838 aa12.68□□□□□ -0.38
CCDC88B-201ENST00000301897 FAHD2BQ6P2I3 314 aaPredicted RBP12.68□□□□□ -0.38
CCDC88B-201ENST00000301897 BBS10Q8TAM1 723 aa12.68□□□□□ -0.38
CCDC88B-201ENST00000301897 AENQ8WTP8 325 aaKnown RBP12.68□□□□□ -0.38
CCDC88B-201ENST00000301897 RAB39BQ96DA2 213 aa12.68□□□□□ -0.38
CCDC88B-201ENST00000301897 TRIM44Q96DX7 344 aaPredicted RBP12.68□□□□□ -0.38
CCDC88B-201ENST00000301897 FAHD2AQ96GK7 314 aa12.68□□□□□ -0.38
CCDC88B-201ENST00000301897 MS4A3Q96HJ5 214 aa12.68□□□□□ -0.38
CCDC88B-201ENST00000301897 ASPNQ9BXN1 380 aa12.68□□□□□ -0.38
CCDC88B-201ENST00000301897 ULBP2Q9BZM5 246 aa12.68□□□□□ -0.38
CCDC88B-201ENST00000301897 LPAR2Q9HBW0 351 aa12.68□□□□□ -0.38
CCDC88B-201ENST00000301897 PNPOQ9NVS9 261 aa12.68□□□□□ -0.38
CCDC88B-201ENST00000301897 TREM2Q9NZC2 230 aa12.68□□□□□ -0.38
CCDC88B-201ENST00000301897 SEC14L4Q9UDX3 406 aa12.68□□□□□ -0.38
CCDC88B-201ENST00000301897 SLC7A8Q9UHI5 535 aa12.68□□□□□ -0.38
CCDC88B-201ENST00000301897 A0A1W2PPW3 197 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms