RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 PRKCAP17252 672 aa13.86□□□□□ -0.19
SF3B4-201ENST00000271628 PTBP1P26599 531 aaKnown RBP eCLIP13.86□□□□□ -0.193e-9■■■■■ 35.6
SF3B4-201ENST00000271628 CDKN2AP42771 156 aaKnown RBP13.86□□□□□ -0.19
SF3B4-201ENST00000271628 ACTA2P62736 377 aa13.86□□□□□ -0.19
SF3B4-201ENST00000271628 ACTG2P63267 376 aa13.86□□□□□ -0.19
SF3B4-201ENST00000271628 FABP5Q01469 135 aa13.86□□□□□ -0.19
SF3B4-201ENST00000271628 NAXDQ8IW45 347 aa13.86□□□□□ -0.19
SF3B4-201ENST00000271628 RDH10Q8IZV5 341 aa13.86□□□□□ -0.19
SF3B4-201ENST00000271628 ZFP41Q8N8Y5 198 aa13.86□□□□□ -0.19
SF3B4-201ENST00000271628 OR5J2Q8NH18 312 aa13.86□□□□□ -0.19
SF3B4-201ENST00000271628 ZMYND19Q96E35 227 aaPredicted RBP13.86□□□□□ -0.19
SF3B4-201ENST00000271628 SPACA9Q96E40 222 aaPredicted RBP13.86□□□□□ -0.19
SF3B4-201ENST00000271628 PTDSS2Q9BVG9 487 aa13.86□□□□□ -0.19
SF3B4-201ENST00000271628 RERGLQ9H628 205 aa13.86□□□□□ -0.19
SF3B4-201ENST00000271628 GALNT9Q9HCQ5 603 aa13.86□□□□□ -0.19
SF3B4-201ENST00000271628 YARS2Q9Y2Z4 477 aaKnown RBP13.86□□□□□ -0.19
SF3B4-201ENST00000271628 HS3ST3B1Q9Y662 390 aa13.86□□□□□ -0.19
SF3B4-201ENST00000271628 R4GN57 208 aa13.86□□□□□ -0.19
SF3B4-201ENST00000271628 COL27A1Q8IZC6 1860 aaPredicted RBP13.85□□□□□ -0.19
SF3B4-201ENST00000271628 IGLV3-32A0A0A0MS00 114 aa13.85□□□□□ -0.19
SF3B4-201ENST00000271628 TEX51A0A1B0GUA7 166 aa13.85□□□□□ -0.19
SF3B4-201ENST00000271628 CENPXA8MT69 81 aa13.85□□□□□ -0.19
SF3B4-201ENST00000271628 TP53I11O14683 189 aa13.85□□□□□ -0.19
SF3B4-201ENST00000271628 STK17BO94768 372 aa13.85□□□□□ -0.19
SF3B4-201ENST00000271628 AHSA1O95433 338 aa13.85□□□□□ -0.19
SF3B4-201ENST00000271628 COX6A1P12074 109 aa13.85□□□□□ -0.19
SF3B4-201ENST00000271628 CFL1P23528 166 aaKnown RBP13.85□□□□□ -0.19
SF3B4-201ENST00000271628 ZNF85Q03923 595 aa13.85□□□□□ -0.19
SF3B4-201ENST00000271628 MFSD13AQ14CX5 517 aa13.85□□□□□ -0.19
SF3B4-201ENST00000271628 TRAM1Q15629 374 aa13.85□□□□□ -0.19
SF3B4-201ENST00000271628 ZFP69Q49AA0 526 aa13.85□□□□□ -0.19
SF3B4-201ENST00000271628 RAB11FIP2Q7L804 512 aa13.85□□□□□ -0.19
SF3B4-201ENST00000271628 LSM14AQ8ND56 463 aaKnown RBP13.85□□□□□ -0.19
SF3B4-201ENST00000271628 SLC25A36Q96CQ1 311 aa13.85□□□□□ -0.19
SF3B4-201ENST00000271628 ST6GAL2Q96JF0 529 aa13.85□□□□□ -0.19
SF3B4-201ENST00000271628 TAAR9Q96RI9 348 aa13.85□□□□□ -0.19
SF3B4-201ENST00000271628 TAS2R5Q9NYW4 299 aa13.85□□□□□ -0.19
SF3B4-201ENST00000271628 MED11Q9P086 117 aa13.85□□□□□ -0.19
SF3B4-201ENST00000271628 POLHQ9Y253 713 aa13.85□□□□□ -0.19
SF3B4-201ENST00000271628 WIF1Q9Y5W5 379 aa13.85□□□□□ -0.19
SF3B4-201ENST00000271628 PCNX3Q9H6A9 2034 aa13.85□□□□□ -0.19
SF3B4-201ENST00000271628 C2orf72A6NCS6 295 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 FAM47E-STBD1D6RA91 191 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 ETV2O00321 342 aaPredicted RBP13.84□□□□□ -0.19
SF3B4-201ENST00000271628 CASKO14936 926 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 OR6A2O95222 327 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 ZNF806P0C7X5 589 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 SNTA1Q13424 505 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 TAB1Q15750 504 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 PYDC2Q56P42 97 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 C1QL3Q5VWW1 255 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 VASH1Q7L8A9 365 aaPredicted RBP13.84□□□□□ -0.19
SF3B4-201ENST00000271628 SLC7A5P1Q8MH63 180 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 SYS1Q8N2H4 156 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 OR10G3Q8NGC4 313 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 DDX28Q9NUL7 540 aaKnown RBP13.84□□□□□ -0.19
SF3B4-201ENST00000271628 NSG1A0A0A6YYJ2 146 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 A0A1W2PQ72 361 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 J3QLW9 94 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 ZNF208O43345 1280 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 RNF13O43567 381 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 PLPP2O43688 288 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 ITGA10O75578 1167 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 SERPINI2O75830 405 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 DXOO77932 396 aaKnown RBP13.84□□□□□ -0.19
SF3B4-201ENST00000271628 RENP00797 406 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 HLA-DQB1P01920 261 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 ZNF19P17023 458 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 ZNF41P51814 821 aaPredicted RBP13.84□□□□□ -0.19
SF3B4-201ENST00000271628 HSF2Q03933 536 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 OPN5Q6U736 354 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 C6orf15Q6UXA7 325 aaPredicted RBP13.84□□□□□ -0.19
SF3B4-201ENST00000271628 NDUFAF7Q7L592 441 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 SLC35F2Q8IXU6 374 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 DND1Q8IYX4 353 aaKnown RBP13.84□□□□□ -0.19
SF3B4-201ENST00000271628 ARIH2OSQ8N7S6 290 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 SYT14Q8NB59 555 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 OR51L1Q8NGJ5 315 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 OR6K6Q8NGW6 343 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 DDIT4LQ96D03 193 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 C4orf36Q96KX1 117 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 TSPAN32Q96QS1 320 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 SOSTQ9BQB4 213 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 TMED9Q9BVK6 235 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 DDA1Q9BW61 102 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 KCNN2Q9H2S1 579 aa13.84□□□□□ -0.19
SF3B4-201ENST00000271628 RPRD1BQ9NQG5 326 aaKnown RBP13.84□□□□□ -0.19
SF3B4-201ENST00000271628 ZNF346Q9UL40 294 aaKnown RBP13.84□□□□□ -0.19
SF3B4-201ENST00000271628 RALGAPA1Q6GYQ0 2036 aa13.83□□□□□ -0.19
SF3B4-201ENST00000271628 CFAP54Q96N23 3096 aa13.83□□□□□ -0.2
SF3B4-201ENST00000271628 TRIM3O75382 744 aaPredicted RBP13.83□□□□□ -0.2
SF3B4-201ENST00000271628 DKK1O94907 266 aa13.83□□□□□ -0.2
SF3B4-201ENST00000271628 JMJD7P0C870 316 aa13.83□□□□□ -0.2
SF3B4-201ENST00000271628 F8A1P23610 371 aa13.83□□□□□ -0.2
SF3B4-201ENST00000271628 PTGDSP41222 190 aa13.83□□□□□ -0.2
SF3B4-201ENST00000271628 INSM1Q01101 510 aaPredicted RBP13.83□□□□□ -0.2
SF3B4-201ENST00000271628 TMEM81Q6P7N7 255 aa13.83□□□□□ -0.2
SF3B4-201ENST00000271628 ZNF248Q8NDW4 579 aa13.83□□□□□ -0.2
SF3B4-201ENST00000271628 OR11G2Q8NGC1 345 aa13.83□□□□□ -0.2
SF3B4-201ENST00000271628 OR2T4Q8NH00 348 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms