RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 VASPP50552 380 aaPredicted RBP12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 RGNQ15493 299 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 TEX261Q6UWH6 196 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 Q6ZVL8 140 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 DNAJC5GQ8N7S2 189 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 TSACCQ96A04 125 aaPredicted RBP12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 STRAPQ9Y3F4 350 aaKnown RBP12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 U3KQ87 197 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 ANTXRLA6NF34 631 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 UMAD1C9J7I0 102 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 F2P00734 622 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 PIP5KL1Q5T9C9 394 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 OPN5Q6U736 354 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 WDR88Q6ZMY6 472 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 BTNL2Q9UIR0 455 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 A0A0J9YY10 115 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 FGF18O76093 207 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 PSMB1P20618 241 aaKnown RBP12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 LGI3Q8N145 548 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 HRASLS5Q96KN8 279 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 GMPR2Q9P2T1 348 aaKnown RBP12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 A6NL46 340 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 TRIM61Q5EBN2 209 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 C18orf63Q68DL7 685 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 HEATR1Q9H583 2144 aaKnown RBP12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 GALR3O60755 368 aaPredicted RBP12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 CER1O95813 267 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 LALBAP00709 142 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 SMPD1P17405 629 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 BLVRBP30043 206 aaPredicted RBP12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 WDR5P61964 334 aaKnown RBP12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 CSNK1G2P78368 415 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 PDZK1IP1Q13113 114 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 TUSC5Q8IXB3 177 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 ZFP90Q8TF47 636 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 SLC12A9Q9BXP2 914 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 YIF1AO95070 293 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 SULT1A3P0DMM9 295 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 SULT1A4P0DMN0 295 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 EIF4E3Q8N5X7 224 aaKnown RBP12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 TFAP2CQ92754 450 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 RASD2Q96D21 266 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 WDR61Q9GZS3 305 aaKnown RBP12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 MED17Q9NVC6 651 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 AK3Q9UIJ7 227 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 ARPC3O15145 178 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 CRXO43186 299 aaPredicted RBP12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 IL1R2P27930 398 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 TIPARPQ7Z3E1 657 aaKnown RBP12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 OR5K2Q8NHB8 316 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 NECTIN4Q96NY8 510 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 ABCC6O95255 1503 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 NSG1A0A0A6YYJ2 146 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 NPIPB15A6NHN6 443 aaPredicted RBP12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 K7ERQ8 282 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 DEGS1O15121 323 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 ACSM4P0C7M7 580 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 H3F3CQ6NXT2 135 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 RNF113BQ8IZP6 322 aaKnown RBP12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 ACVR1CQ8NER5 493 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 OR6K3Q8NGY3 331 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 C12orf10Q9HB07 376 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 PTRH2Q9Y3E5 179 aaKnown RBP12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 OR6C76A6NM76 312 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 ADRA2CP18825 462 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 ZNF85Q03923 595 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 TMEM183BQ1AE95 376 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 PDZD11Q5EBL8 140 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 RPS27LQ71UM5 84 aaKnown RBP12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 RAB22AQ9UL26 194 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 LAMP3Q9UQV4 416 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 GATMP50440 423 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 KRTDAPP60985 99 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 TRA2BP62995 288 aaKnown RBP12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 CABLES2Q9BTV7 478 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 NRIP3Q9NQ35 241 aa12.97□□□□□ -0.33
CCDC88A-201ENST00000263630 A0A1W2PQU0 124 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 E5RGE8 158 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 ADRB1P08588 477 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 SLC35A1P78382 337 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 OR2T6Q8NHC8 308 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 L3HYPDHQ96EM0 354 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 SUCNR1Q9BXA5 334 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 NTN4Q9HB63 628 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 SPHK2Q9NRA0 654 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 ZNF443Q9Y2A4 671 aaPredicted RBP12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 A0A0D9SEW6 157 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 M0R3H8 397 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 IL1RNP18510 177 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 EDDM3BP56851 147 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 MBTPS1Q14703 1052 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 SCARB1Q8WTV0 552 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 AGLP35573 1532 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 FOXD2O60548 495 aaPredicted RBP12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 STC2O76061 302 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 EMP3P54852 163 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 TMEM139Q8IV31 216 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 OR2AE1Q8NHA4 323 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 TRBV11-1A0A0K0K1C0 115 aa12.96□□□□□ -0.33
CCDC88A-201ENST00000263630 PIRO00625 290 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms