RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 SLC16A7O60669 478 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 HLA-EP13747 358 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 CEACAM6P40199 344 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM267Q0VDI3 215 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 MMGT1Q8N4V1 131 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 SLC2A12Q8TD20 617 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 CD200R1Q8TD46 325 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 SEH1LQ96EE3 360 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 GMPPAQ96IJ6 420 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 LRRC4CQ9HCJ2 640 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 ACOXLQ9NUZ1 547 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 LPAR3Q9UBY5 353 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 OTOL1A6NHN0 477 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 GABRR3A8MPY1 467 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 ATP5LO75964 103 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 GTF2F2P13984 249 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 CNN1P51911 297 aaKnown RBP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 RAB41Q5JT25 222 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 ELFN2Q5R3F8 820 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM225Q6GV28 225 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 DHRS13Q6UX07 377 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 CMTM4Q8IZR5 234 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 METTL27Q8N6F8 245 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 ZMIZ2Q8NF64 920 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 OR4C13Q8NGP0 309 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 GLYATL2Q8WU03 294 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 SLC39A7Q92504 469 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 SCRN2Q96FV2 425 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 MRGPRX2Q96LB1 330 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 ATF6BQ99941 703 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 THAP7Q9BT49 309 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF426Q9BUY5 554 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 ERVK13-1Q9NX77 482 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 SOX21Q9Y651 276 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM131Q92545 1883 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 NPIPB15A6NHN6 443 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 FAM155BO75949 473 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 ARSAP15289 507 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 TFPI2P48307 235 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 RFX2P48378 723 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 EIF5AP63241 154 aaKnown RBP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 KLRC3Q07444 240 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 NFATC3Q12968 1075 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 OCIAD2Q56VL3 154 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 ESPNLQ6ZVH7 1005 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 OR4C15Q8NGM1 316 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 RAD54LQ92698 747 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 DUSP16Q9BY84 665 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM39BQ9GZU3 492 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 FIS1Q9Y3D6 152 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 WDR45Q9Y484 360 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 ATG2AQ2TAZ0 1938 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 TARM1B6A8C7 271 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 H7C1C5 153 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 HSPB6O14558 160 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 TSPAN15O95858 294 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 TTLL1O95922 423 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 BPGMP07738 259 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 OR5G3P0C626 314 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 PRDX2P32119 198 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 SPRP35270 261 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 DDOSTP39656 456 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 LCN6P62502 163 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 MFSD10Q14728 455 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM205Q6UW68 189 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 PAMR1Q6UXH9 720 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 HAPLN4Q86UW8 402 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 BPIFB2Q8N4F0 458 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 DHRSXQ8N5I4 330 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 RELL2Q8NC24 303 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 PIGLQ9Y2B2 252 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 TIMM8BQ9Y5J9 83 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 BAHCC1Q9P281 2608 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 RIIAD1A6NNX1 92 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 DLX3O60479 287 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 BMP4P12644 408 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 TAS2R31P59538 309 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 RELBQ01201 579 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 FPGSQ05932 587 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 EIF2B1Q14232 305 aaKnown RBP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 CPSF6Q16630 551 aaKnown RBP eCLIP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 UPP1Q16831 310 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 METTL7BQ6UX53 244 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 USP50Q70EL3 339 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 YRDCQ86U90 279 aaKnown RBP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 SLC35F2Q8IXU6 374 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 OR6F1Q8NGZ6 308 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 ZBTB45Q96K62 511 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 MAP2P11137 1827 aaKnown RBP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 KIAA1671Q9BY89 1806 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 GREB1Q4ZG55 1949 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 MAP3K1Q13233 1512 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 M0QYG6 137 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 TIMM8AO60220 97 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 C1QBP02746 253 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 OR5H8P0DN80 308 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 SLC2A4P14672 509 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 RBMS1P29558 406 aaKnown RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 RPL26P61254 145 aaKnown RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 HIST1H3AP68431 136 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms