RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 ACKR1Q16570 336 aa14.05□□□□□ -0.16
BRCA1-228ENST00000618469 OR7E24Q6IFN5 339 aa14.05□□□□□ -0.16
BRCA1-228ENST00000618469 TTC33Q6PID6 262 aaPredicted RBP14.05□□□□□ -0.16
BRCA1-228ENST00000618469 C20orf204Q6ZNR8 217 aa14.05□□□□□ -0.16
BRCA1-228ENST00000618469 P2RY8Q86VZ1 359 aa14.05□□□□□ -0.16
BRCA1-228ENST00000618469 UEVLDQ8IX04 471 aa14.05□□□□□ -0.16
BRCA1-228ENST00000618469 SCAIQ8N9R8 606 aa14.05□□□□□ -0.16
BRCA1-228ENST00000618469 C1orf162Q8NEQ5 155 aaPredicted RBP14.05□□□□□ -0.16
BRCA1-228ENST00000618469 SLC41A3Q96GZ6 507 aa14.05□□□□□ -0.16
BRCA1-228ENST00000618469 MPP4Q96JB8 637 aa14.05□□□□□ -0.16
BRCA1-228ENST00000618469 CCL19Q99731 98 aa14.05□□□□□ -0.16
BRCA1-228ENST00000618469 TMEM204Q9BSN7 226 aa14.05□□□□□ -0.16
BRCA1-228ENST00000618469 NPAP1Q9NZP6 1156 aa14.05□□□□□ -0.16
BRCA1-228ENST00000618469 RCE1Q9Y256 329 aa14.05□□□□□ -0.16
BRCA1-228ENST00000618469 ARL2BPQ9Y2Y0 163 aa14.05□□□□□ -0.16
BRCA1-228ENST00000618469 ZNF587BE7ETH6 402 aa14.04□□□□□ -0.16
BRCA1-228ENST00000618469 CXCR6O00574 342 aa14.04□□□□□ -0.16
BRCA1-228ENST00000618469 TRAF3IP2O43734 574 aaPredicted RBP14.04□□□□□ -0.16
BRCA1-228ENST00000618469 AKAP8O43823 692 aaKnown RBP14.04□□□□□ -0.16
BRCA1-228ENST00000618469 HPRP00739 348 aa14.04□□□□□ -0.16
BRCA1-228ENST00000618469 MT-ATP6P00846 226 aa14.04□□□□□ -0.16
BRCA1-228ENST00000618469 PSME3P61289 254 aa14.04□□□□□ -0.16
BRCA1-228ENST00000618469 NKX6-1P78426 367 aaPredicted RBP14.04□□□□□ -0.16
BRCA1-228ENST00000618469 POU3F1Q03052 451 aaPredicted RBP14.04□□□□□ -0.16
BRCA1-228ENST00000618469 TGFBR3Q03167 851 aa14.04□□□□□ -0.16
BRCA1-228ENST00000618469 PUDPQ08623 228 aa14.04□□□□□ -0.16
BRCA1-228ENST00000618469 PMS2P3Q13401 168 aa14.04□□□□□ -0.16
BRCA1-228ENST00000618469 GABRA6Q16445 453 aa14.04□□□□□ -0.16
BRCA1-228ENST00000618469 NCMAPQ5T1S8 102 aa14.04□□□□□ -0.16
BRCA1-228ENST00000618469 ADAM5Q6NVV9 412 aa14.04□□□□□ -0.16
BRCA1-228ENST00000618469 LINC00114Q6XXX2 140 aa14.04□□□□□ -0.16
BRCA1-228ENST00000618469 SSX8Q7RTT4 187 aa14.04□□□□□ -0.16
BRCA1-228ENST00000618469 ABHD12BQ7Z5M8 362 aaPredicted RBP14.04□□□□□ -0.16
BRCA1-228ENST00000618469 KBTBD8Q8NFY9 601 aa14.04□□□□□ -0.16
BRCA1-228ENST00000618469 LZICQ8WZA0 190 aa14.04□□□□□ -0.16
BRCA1-228ENST00000618469 KCTD14Q9BQ13 255 aaPredicted RBP14.04□□□□□ -0.16
BRCA1-228ENST00000618469 AMBRA1Q9C0C7 1298 aa14.04□□□□□ -0.16
BRCA1-228ENST00000618469 MRPL39Q9NYK5 338 aaKnown RBP14.04□□□□□ -0.16
BRCA1-228ENST00000618469 ABCD2Q9UBJ2 740 aa14.04□□□□□ -0.16
BRCA1-228ENST00000618469 OR6C65A6NJZ3 312 aa14.03□□□□□ -0.16
BRCA1-228ENST00000618469 NDUFAB1O14561 156 aa14.03□□□□□ -0.16
BRCA1-228ENST00000618469 SLC43A1O75387 559 aa14.03□□□□□ -0.16
BRCA1-228ENST00000618469 UPK3AO75631 287 aa14.03□□□□□ -0.16
BRCA1-228ENST00000618469 SERPINI2O75830 405 aa14.03□□□□□ -0.16
BRCA1-228ENST00000618469 OR5F1O95221 314 aa14.03□□□□□ -0.16
BRCA1-228ENST00000618469 ZNF682O95780 498 aa14.03□□□□□ -0.16
BRCA1-228ENST00000618469 CH25HO95992 272 aa14.03□□□□□ -0.16
BRCA1-228ENST00000618469 ZNF74Q16587 644 aa14.03□□□□□ -0.16
BRCA1-228ENST00000618469 KLHL24Q6TFL4 600 aa14.03□□□□□ -0.16
BRCA1-228ENST00000618469 CXXC5Q7LFL8 322 aaKnown RBP14.03□□□□□ -0.16
BRCA1-228ENST00000618469 VTCN1Q7Z7D3 282 aa14.03□□□□□ -0.16
BRCA1-228ENST00000618469 C17orf78Q8N4C9 275 aa14.03□□□□□ -0.16
BRCA1-228ENST00000618469 OR5J2Q8NH18 312 aa14.03□□□□□ -0.16
BRCA1-228ENST00000618469 AKAP1Q92667 903 aaKnown RBP eCLIP14.03□□□□□ -0.16
BRCA1-228ENST00000618469 PRSS27Q9BQR3 290 aa14.03□□□□□ -0.16
BRCA1-228ENST00000618469 ZNF426Q9BUY5 554 aa14.03□□□□□ -0.16
BRCA1-228ENST00000618469 POLR2J2Q9GZM3 115 aaKnown RBP14.03□□□□□ -0.16
BRCA1-228ENST00000618469 POLR2J3Q9H1A7 115 aaKnown RBP14.03□□□□□ -0.16
BRCA1-228ENST00000618469 SPAG4Q9NPE6 437 aa14.03□□□□□ -0.16
BRCA1-228ENST00000618469 BEX4Q9NWD9 120 aaPredicted RBP14.03□□□□□ -0.16
BRCA1-228ENST00000618469 SLC25A15Q9Y619 301 aa14.03□□□□□ -0.16
BRCA1-228ENST00000618469 DPRXA6NFQ7 191 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 MS4A18H0YCH9 400 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 HS3ST1O14792 307 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 DCTN3O75935 186 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 ZNF432O94892 652 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 UMPSP11172 480 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 HLA-DOBP13765 273 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 AHCYP23526 432 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 ZNF83P51522 516 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 SELENOWP63302 87 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 SLC25A3Q00325 362 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 PIN1Q13526 163 aaPredicted RBP14.02□□□□□ -0.17
BRCA1-228ENST00000618469 MS4A18Q3C1V0 323 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 HIKESHIQ53FT3 197 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 CARD17Q5XLA6 110 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 HMBOX1Q6NT76 420 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 LINGO2Q7L985 606 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 PIGWQ7Z7B1 504 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 NKAIN4Q8IVV8 208 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 TMEM255BQ8WV15 326 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 FAM162AQ96A26 154 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 MUS81Q96NY9 551 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 LRRC37BQ96QE4 947 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 OR2M2Q96R28 347 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 LINC00470Q9BZP3 86 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 SLC19A3Q9BZV2 496 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 FKRPQ9H9S5 495 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 NANSQ9NR45 359 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 SLC17A5Q9NRA2 495 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 MED29Q9NX70 200 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 ADA2Q9NZK5 511 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 ADAM21Q9UKJ8 722 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 AMDHD2Q9Y303 409 aa14.02□□□□□ -0.17
BRCA1-228ENST00000618469 FBN1P35555 2871 aaKnown RBP14.02□□□□□ -0.17
BRCA1-228ENST00000618469 LOC102725191A0A1B0GVB3 256 aa14.01□□□□□ -0.17
BRCA1-228ENST00000618469 INAFM1C9JVW0 142 aa14.01□□□□□ -0.17
BRCA1-228ENST00000618469 C11orf98E9PRG8 122 aa14.01□□□□□ -0.17
BRCA1-228ENST00000618469 H7C1Q1 480 aa14.01□□□□□ -0.17
BRCA1-228ENST00000618469 M0R1B8 84 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms