RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 APOOLQ6UXV4 268 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 FAM24BQ8N5W8 94 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 ZNF784Q8NCA9 323 aaPredicted RBP9.41□□□□□ -0.9
VPS39-214ENST00000614932 OR9A1PQ8NGU1 263 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 PHYHIPQ92561 330 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 CMTM7Q96FZ5 175 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 TMEM106CQ9BVX2 250 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 AUNIPQ9H7T9 357 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 CAMK2AQ9UQM7 478 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 TRAV14DV4A0A0A6YYC5 116 aa9.4□□□□□ -0.9
VPS39-214ENST00000614932 RPL36A-HNRNPH2H7BZ11 118 aa9.4□□□□□ -0.9
VPS39-214ENST00000614932 AQP1P29972 269 aa9.4□□□□□ -0.9
VPS39-214ENST00000614932 ADH7P40394 386 aa9.4□□□□□ -0.9
VPS39-214ENST00000614932 GSK3AP49840 483 aa9.4□□□□□ -0.9
VPS39-214ENST00000614932 HMGA2P52926 109 aa9.4□□□□□ -0.9
VPS39-214ENST00000614932 PTSQ03393 145 aa9.4□□□□□ -0.9
VPS39-214ENST00000614932 GDPD4Q6W3E5 623 aa9.4□□□□□ -0.9
VPS39-214ENST00000614932 PRSS45Q7RTY3 260 aa9.4□□□□□ -0.9
VPS39-214ENST00000614932 C5orf24Q7Z6I8 188 aa9.4□□□□□ -0.9
VPS39-214ENST00000614932 FAM26EQ8N5C1 309 aa9.4□□□□□ -0.9
VPS39-214ENST00000614932 LMNTD1Q8N9Z9 388 aa9.4□□□□□ -0.9
VPS39-214ENST00000614932 NPRL2Q8WTW4 380 aa9.4□□□□□ -0.9
VPS39-214ENST00000614932 HMGB4Q8WW32 186 aa9.4□□□□□ -0.9
VPS39-214ENST00000614932 MVB12AQ96EY5 273 aa9.4□□□□□ -0.9
VPS39-214ENST00000614932 PTCHD1Q96NR3 888 aa9.4□□□□□ -0.9
VPS39-214ENST00000614932 S100A13Q99584 98 aa9.4□□□□□ -0.9
VPS39-214ENST00000614932 TMEM100Q9NV29 134 aa9.4□□□□□ -0.9
VPS39-214ENST00000614932 MAP4K5Q9Y4K4 846 aa9.4□□□□□ -0.9
VPS39-214ENST00000614932 TIMM10BQ9Y5J6 103 aa9.4□□□□□ -0.9
VPS39-214ENST00000614932 ANTXRLA6NF34 631 aa9.4□□□□□ -0.91
VPS39-214ENST00000614932 GGT3PA6NGU5 568 aa9.4□□□□□ -0.91
VPS39-214ENST00000614932 OR2AG2A6NM03 316 aa9.4□□□□□ -0.91
VPS39-214ENST00000614932 PGRMC2O15173 223 aa9.4□□□□□ -0.91
VPS39-214ENST00000614932 EFSO43281 561 aa9.4□□□□□ -0.91
VPS39-214ENST00000614932 TLX2O43763 284 aaPredicted RBP9.4□□□□□ -0.91
VPS39-214ENST00000614932 TIMP1P01033 207 aa9.4□□□□□ -0.91
VPS39-214ENST00000614932 GSTP1P09211 210 aaKnown RBP9.4□□□□□ -0.91
VPS39-214ENST00000614932 CTSAP10619 480 aa9.4□□□□□ -0.91
VPS39-214ENST00000614932 OR1E2P47887 323 aa9.4□□□□□ -0.91
VPS39-214ENST00000614932 SUCLG1P53597 346 aaKnown RBP9.4□□□□□ -0.91
VPS39-214ENST00000614932 RAB40BQ12829 278 aa9.4□□□□□ -0.91
VPS39-214ENST00000614932 SLC9A5Q14940 896 aa9.4□□□□□ -0.91
VPS39-214ENST00000614932 CDKN3Q16667 212 aa9.4□□□□□ -0.91
VPS39-214ENST00000614932 NKPD1Q17RQ9 610 aa9.4□□□□□ -0.91
VPS39-214ENST00000614932 LINC00303Q3SY05 128 aa9.4□□□□□ -0.91
VPS39-214ENST00000614932 KHDC3LQ587J8 217 aa9.4□□□□□ -0.91
VPS39-214ENST00000614932 LY6G5CQ5SRR4 150 aa9.4□□□□□ -0.91
VPS39-214ENST00000614932 C22orf39Q6P5X5 142 aa9.4□□□□□ -0.91
VPS39-214ENST00000614932 C11orf88Q6PI97 169 aa9.4□□□□□ -0.91
VPS39-214ENST00000614932 TIPARPQ7Z3E1 657 aaKnown RBP9.4□□□□□ -0.91
VPS39-214ENST00000614932 BPIFB2Q8N4F0 458 aa9.4□□□□□ -0.91
VPS39-214ENST00000614932 ZBTB2Q8N680 514 aa9.4□□□□□ -0.91
VPS39-214ENST00000614932 OR10AD1Q8NGE0 317 aa9.4□□□□□ -0.91
VPS39-214ENST00000614932 ADAM19Q9H013 955 aa9.4□□□□□ -0.91
VPS39-214ENST00000614932 RHOFQ9HBH0 211 aa9.4□□□□□ -0.91
VPS39-214ENST00000614932 PTGFRNQ9P2B2 879 aa9.4□□□□□ -0.91
VPS39-214ENST00000614932 B4GALT6Q9UBX8 382 aa9.4□□□□□ -0.91
VPS39-214ENST00000614932 CACFD1Q9UGQ2 172 aa9.4□□□□□ -0.91
VPS39-214ENST00000614932 SLC27A6Q9Y2P4 619 aa9.4□□□□□ -0.91
VPS39-214ENST00000614932 PIKFYVEQ9Y2I7 2098 aa9.4□□□□□ -0.91
VPS39-214ENST00000614932 ELOA3CA0A087WX78 387 aaPredicted RBP9.39□□□□□ -0.91
VPS39-214ENST00000614932 OR5H15A6NDH6 313 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 OR5H1A6NKK0 313 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 IDSB3KWA1 339 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 RNASEK-C17orf49H0YIS7 233 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 H3BN98 237 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 PCDH7O60245 1069 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 SOX14O95416 240 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 UCHL1P09936 223 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 SLC35G4P0C7Q5 338 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 EPCAMP16422 314 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 MPZP25189 248 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 TACR3P29371 465 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 MC3RP41968 323 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 GAS1P54826 345 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 RPS14P62263 151 aaKnown RBP9.39□□□□□ -0.91
VPS39-214ENST00000614932 SNRPD1P62314 119 aaKnown RBP9.39□□□□□ -0.91
VPS39-214ENST00000614932 B4GALNT1Q00973 533 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 ODF4Q2M2E3 257 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 SYT14P1Q58G82 188 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 TMEM215Q68D42 235 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 ZNF664Q8N3J9 261 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 PNLDC1Q8NA58 520 aaKnown RBP9.39□□□□□ -0.91
VPS39-214ENST00000614932 HSD17B11Q8NBQ5 300 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 ZNF485Q8NCK3 441 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 FBXO15Q8NCQ5 510 aaPredicted RBP9.39□□□□□ -0.91
VPS39-214ENST00000614932 OR8J2Q8NGG1 315 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 FIBINQ8TAL6 211 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 C16orf78Q8WTQ4 265 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 RNF141Q8WVD5 230 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 TRMT61BQ9BVS5 477 aaKnown RBP9.39□□□□□ -0.91
VPS39-214ENST00000614932 SLC6A16Q9GZN6 736 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 LRTM1Q9HBL6 345 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 THSD1Q9NS62 852 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 FAM120CQ9NX05 1096 aaKnown RBP9.39□□□□□ -0.91
VPS39-214ENST00000614932 OR14J1Q9UGF5 321 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 C7orf77A4D0Y5 90 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 TBC1D3BA6NDS4 549 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 LOC730098B7Z3J9 87 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 J3KTA2 159 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms