RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 CRISP3P54108 245 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 FOXG1P55316 489 aaPredicted RBP5.44□□□□□ -1.54
CUX1-220ENST00000607092 MYBPC1Q00872 1141 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 ROR2Q01974 943 aaKnown RBP5.44□□□□□ -1.54
CUX1-220ENST00000607092 EPS8Q12929 822 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 FOXL1Q12952 345 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 SNTB2Q13425 540 aaKnown RBP5.44□□□□□ -1.54
CUX1-220ENST00000607092 C1DQ13901 141 aaKnown RBP5.44□□□□□ -1.54
CUX1-220ENST00000607092 FAM174BQ3ZCQ3 159 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 GLIPR1L2Q4G1C9 344 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 ARSJQ5FYB0 599 aaPredicted RBP5.44□□□□□ -1.54
CUX1-220ENST00000607092 MRPL2Q5T653 305 aaKnown RBP5.44□□□□□ -1.54
CUX1-220ENST00000607092 RNF220Q5VTB9 566 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 C1orf140Q5VVS0 124 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 FAM219BQ5XKK7 198 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 OR4F3Q6IEY1 312 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 SHISA2Q6UWI4 295 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 UNQ6126/PRO20091Q6UXV3 157 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 DPPA2Q7Z7J5 298 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 C4orf33Q8N1A6 199 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 SVOPLQ8N434 492 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 ZIC4Q8N9L1 334 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 GLB1L3Q8NCI6 653 aaPredicted RBP5.44□□□□□ -1.54
CUX1-220ENST00000607092 OR4M2Q8NGB6 313 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 EPS8L3Q8TE67 593 aaKnown RBP5.44□□□□□ -1.54
CUX1-220ENST00000607092 SNX33Q8WV41 574 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 CNOT9Q92600 299 aaKnown RBP5.44□□□□□ -1.54
CUX1-220ENST00000607092 RAB8BQ92930 207 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 MRPL24Q96A35 216 aaKnown RBP5.44□□□□□ -1.54
CUX1-220ENST00000607092 CCDC115Q96NT0 180 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 ZNF385AQ96PM9 386 aaKnown RBP5.44□□□□□ -1.54
CUX1-220ENST00000607092 ALKBH3Q96Q83 286 aaPredicted RBP5.44□□□□□ -1.54
CUX1-220ENST00000607092 ZBTB18Q99592 522 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 SLC35A5Q9BS91 424 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 TMEM109Q9BVC6 243 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 TXLNGYQ9BZA5 131 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 ROPN1BQ9BZX4 212 aaPredicted RBP5.44□□□□□ -1.54
CUX1-220ENST00000607092 C1orf198Q9H425 327 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 ROPN1Q9HAT0 212 aaPredicted RBP5.44□□□□□ -1.54
CUX1-220ENST00000607092 C12orf10Q9HB07 376 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 CRLF2Q9HC73 371 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 P2RX2Q9UBL9 471 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 RPS6KB2Q9UBS0 482 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 REV1Q9UBZ9 1251 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 BTNL2Q9UIR0 455 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.44□□□□□ -1.54
CUX1-220ENST00000607092 IFT52Q9Y366 437 aa5.44□□□□□ -1.54
CUX1-220ENST00000607092 WNK2Q9Y3S1 2297 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 CENPVL1A0A0U1RR11 272 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 LOC102725191A0A1B0GVB3 256 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 CDHR4A6H8M9 788 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 ZNF99A8MXY4 864 aaPredicted RBP5.43□□□□□ -1.54
CUX1-220ENST00000607092 TMEM233B4DJY2 109 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 E9PBE3 544 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 HMGN4O00479 90 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 FRS3O43559 492 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 MGRN1O60291 552 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 UBL3O95164 117 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 VENTXO95231 258 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 CPSF4O95639 269 aaKnown RBP5.43□□□□□ -1.54
CUX1-220ENST00000607092 RAB36O95755 333 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 PTHP01270 115 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 CHRNGP07510 517 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 ADRA2AP08913 450 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 FAM153BP0C7A2 387 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 PNMTP11086 282 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 BMP2P12643 396 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 ALDH3A1P30838 453 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 ARRB2P32121 409 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 S100A3P33764 101 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 SELENOPP49908 381 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 ARF1P84077 181 aaKnown RBP5.43□□□□□ -1.54
CUX1-220ENST00000607092 SRSF2Q01130 221 aaKnown RBP5.43□□□□□ -1.54
CUX1-220ENST00000607092 HGFACQ04756 655 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 SLC3A1Q07837 685 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 NPRL3Q12980 569 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 CCNIQ14094 377 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 GSG1Q2KHT4 349 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 ZNF311Q5JNZ3 666 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 PRR31Q5SQ13 230 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 FAM69AQ5T7M9 428 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 GKAP1Q5VSY0 366 aaPredicted RBP5.43□□□□□ -1.54
CUX1-220ENST00000607092 ACSM5Q6NUN0 579 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 FAHD2BQ6P2I3 314 aaPredicted RBP5.43□□□□□ -1.54
CUX1-220ENST00000607092 TMEM154Q6P9G4 183 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 ZCCHC23Q6ZST2 131 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 PEG10Q86TG7 708 aaKnown RBP5.43□□□□□ -1.54
CUX1-220ENST00000607092 ANKRD46Q86W74 232 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 GSPT2Q8IYD1 628 aaKnown RBP5.43□□□□□ -1.54
CUX1-220ENST00000607092 CLECL1Q8IZS7 167 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 BPIFB2Q8N4F0 458 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 ADPRHL1Q8NDY3 354 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 CPEB3Q8NE35 698 aaKnown RBP5.43□□□□□ -1.54
CUX1-220ENST00000607092 NANPQ8TBE9 248 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 RNF217Q8TC41 542 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 AGR3Q8TD06 166 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 UBLCP1Q8WVY7 318 aaPredicted RBP5.43□□□□□ -1.54
CUX1-220ENST00000607092 ZNF524Q96C55 264 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 FAHD2AQ96GK7 314 aa5.43□□□□□ -1.54
CUX1-220ENST00000607092 TIMD4Q96H15 378 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms