RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 DCAF13Q9NV06 445 aaKnown RBP14.84□□□□□ -0.03
TRIM28-215ENST00000601150 ZNF229Q9UJW7 825 aa14.84□□□□□ -0.03
TRIM28-215ENST00000601150 SAMD4AQ9UPU9 718 aaKnown RBP14.84□□□□□ -0.03
TRIM28-215ENST00000601150 NOX1Q9Y5S8 564 aa14.84□□□□□ -0.03
TRIM28-215ENST00000601150 SNX13Q9Y5W8 968 aa14.84□□□□□ -0.03
TRIM28-215ENST00000601150 PRR14LQ5THK1 2151 aa14.84□□□□□ -0.03
TRIM28-215ENST00000601150 A0A1W2PPR1 153 aa14.83□□□□□ -0.04
TRIM28-215ENST00000601150 SLC43A1O75387 559 aa14.83□□□□□ -0.04
TRIM28-215ENST00000601150 ZNF432O94892 652 aa14.83□□□□□ -0.04
TRIM28-215ENST00000601150 IGF2P01344 180 aa14.83□□□□□ -0.04
TRIM28-215ENST00000601150 CALB2P22676 271 aa14.83□□□□□ -0.04
TRIM28-215ENST00000601150 LOXP28300 417 aaPredicted RBP14.83□□□□□ -0.04
TRIM28-215ENST00000601150 MPGP29372 298 aa14.83□□□□□ -0.04
TRIM28-215ENST00000601150 NR1H2P55055 460 aa14.83□□□□□ -0.04
TRIM28-215ENST00000601150 POU3F1Q03052 451 aaPredicted RBP14.83□□□□□ -0.04
TRIM28-215ENST00000601150 TGFBR3Q03167 851 aa14.83□□□□□ -0.04
TRIM28-215ENST00000601150 FOXD4Q12950 439 aaPredicted RBP14.83□□□□□ -0.04
TRIM28-215ENST00000601150 PPA1Q15181 289 aa14.83□□□□□ -0.04
TRIM28-215ENST00000601150 GABRA6Q16445 453 aa14.83□□□□□ -0.04
TRIM28-215ENST00000601150 C9orf135Q5VTT2 229 aa14.83□□□□□ -0.04
TRIM28-215ENST00000601150 OR7E24Q6IFN5 339 aa14.83□□□□□ -0.04
TRIM28-215ENST00000601150 PXKQ7Z7A4 578 aa14.83□□□□□ -0.04
TRIM28-215ENST00000601150 OFCC1Q8IZS5 231 aa14.83□□□□□ -0.04
TRIM28-215ENST00000601150 LRRC17Q8N6Y2 441 aa14.83□□□□□ -0.04
TRIM28-215ENST00000601150 RBM15BQ8NDT2 890 aaKnown RBP14.83□□□□□ -0.04
TRIM28-215ENST00000601150 C1orf162Q8NEQ5 155 aaPredicted RBP14.83□□□□□ -0.04
TRIM28-215ENST00000601150 PFN4Q8NHR9 129 aa14.83□□□□□ -0.04
TRIM28-215ENST00000601150 MUS81Q96NY9 551 aa14.83□□□□□ -0.04
TRIM28-215ENST00000601150 HS3ST6Q96QI5 342 aa14.83□□□□□ -0.04
TRIM28-215ENST00000601150 FNDC11Q9BVV2 318 aa14.83□□□□□ -0.04
TRIM28-215ENST00000601150 LINC00470Q9BZP3 86 aa14.83□□□□□ -0.04
TRIM28-215ENST00000601150 LIME1Q9H400 295 aa14.83□□□□□ -0.04
TRIM28-215ENST00000601150 MED31Q9Y3C7 131 aa14.83□□□□□ -0.04
TRIM28-215ENST00000601150 SPG11Q96JI7 2443 aa14.82□□□□□ -0.04
TRIM28-215ENST00000601150 ZNF587BE7ETH6 402 aa14.82□□□□□ -0.04
TRIM28-215ENST00000601150 J3KTA2 159 aa14.82□□□□□ -0.04
TRIM28-215ENST00000601150 ADORA3P0DMS8 318 aa14.82□□□□□ -0.04
TRIM28-215ENST00000601150 UMPSP11172 480 aa14.82□□□□□ -0.04
TRIM28-215ENST00000601150 HLA-DOBP13765 273 aa14.82□□□□□ -0.04
TRIM28-215ENST00000601150 AHCYP23526 432 aa14.82□□□□□ -0.04
TRIM28-215ENST00000601150 MSX2P35548 267 aaPredicted RBP14.82□□□□□ -0.04
TRIM28-215ENST00000601150 LGALS3BPQ08380 585 aa14.82□□□□□ -0.04
TRIM28-215ENST00000601150 ZP4Q12836 540 aa14.82□□□□□ -0.04
TRIM28-215ENST00000601150 TRAM2Q15035 370 aa14.82□□□□□ -0.04
TRIM28-215ENST00000601150 SLC46A3Q7Z3Q1 461 aa14.82□□□□□ -0.04
TRIM28-215ENST00000601150 CYP4Z1Q86W10 505 aa14.82□□□□□ -0.04
TRIM28-215ENST00000601150 C17orf78Q8N4C9 275 aa14.82□□□□□ -0.04
TRIM28-215ENST00000601150 SGTBQ96EQ0 304 aa14.82□□□□□ -0.04
TRIM28-215ENST00000601150 PLPPR2Q96GM1 343 aa14.82□□□□□ -0.04
TRIM28-215ENST00000601150 OR2M2Q96R28 347 aa14.82□□□□□ -0.04
TRIM28-215ENST00000601150 RHCGQ9UBD6 479 aa14.82□□□□□ -0.04
TRIM28-215ENST00000601150 ST6GALNAC2Q9UJ37 374 aa14.82□□□□□ -0.04
TRIM28-215ENST00000601150 ENPP4Q9Y6X5 453 aa14.82□□□□□ -0.04
TRIM28-215ENST00000601150 CREBBPQ92793 2442 aa14.81□□□□□ -0.04
TRIM28-215ENST00000601150 HTR3EA5X5Y0 456 aa14.81□□□□□ -0.04
TRIM28-215ENST00000601150 C11orf98E9PRG8 122 aa14.81□□□□□ -0.04
TRIM28-215ENST00000601150 FFAR1O14842 300 aa14.81□□□□□ -0.04
TRIM28-215ENST00000601150 ARPC2O15144 300 aa14.81□□□□□ -0.04
TRIM28-215ENST00000601150 UPK3AO75631 287 aa14.81□□□□□ -0.04
TRIM28-215ENST00000601150 OR7A10O76100 309 aa14.81□□□□□ -0.04
TRIM28-215ENST00000601150 ASAH2BP0C7U1 165 aa14.81□□□□□ -0.04
TRIM28-215ENST00000601150 T-ENOLP0DO92 83 aa14.81□□□□□ -0.04
TRIM28-215ENST00000601150 SEZ6L2Q6UXD5 910 aa14.81□□□□□ -0.04
TRIM28-215ENST00000601150 PAMR1Q6UXH9 720 aa14.81□□□□□ -0.04
TRIM28-215ENST00000601150 NHLRC1Q6VVB1 395 aa14.81□□□□□ -0.04
TRIM28-215ENST00000601150 NANOGNBQ7Z5D8 188 aa14.81□□□□□ -0.04
TRIM28-215ENST00000601150 TMEM123Q8N131 208 aa14.81□□□□□ -0.04
TRIM28-215ENST00000601150 ARHGAP24Q8N264 748 aa14.81□□□□□ -0.04
TRIM28-215ENST00000601150 PIK3C3Q8NEB9 887 aa14.81□□□□□ -0.04
TRIM28-215ENST00000601150 ANKK1Q8NFD2 765 aa14.81□□□□□ -0.04
TRIM28-215ENST00000601150 NINJ1Q92982 152 aa14.81□□□□□ -0.04
TRIM28-215ENST00000601150 NSMCE2Q96MF7 247 aa14.81□□□□□ -0.04
TRIM28-215ENST00000601150 ALKBH3Q96Q83 286 aaPredicted RBP14.81□□□□□ -0.04
TRIM28-215ENST00000601150 ESRP2Q9H6T0 727 aaKnown RBP14.81□□□□□ -0.04
TRIM28-215ENST00000601150 C20orf141Q9NUB4 165 aa14.81□□□□□ -0.04
TRIM28-215ENST00000601150 TAS2R5Q9NYW4 299 aa14.81□□□□□ -0.04
TRIM28-215ENST00000601150 RAI1Q7Z5J4 1906 aaPredicted RBP14.81□□□□□ -0.04
TRIM28-215ENST00000601150 AKAP6Q13023 2319 aa14.81□□□□□ -0.04
TRIM28-215ENST00000601150 ZNF726A6NNF4 738 aa14.8□□□□□ -0.04
TRIM28-215ENST00000601150 RNF13O43567 381 aa14.8□□□□□ -0.04
TRIM28-215ENST00000601150 SERPINI2O75830 405 aa14.8□□□□□ -0.04
TRIM28-215ENST00000601150 PRSS23O95084 383 aa14.8□□□□□ -0.04
TRIM28-215ENST00000601150 RAF1P04049 648 aa14.8□□□□□ -0.04
TRIM28-215ENST00000601150 CDH2P19022 906 aaPredicted RBP14.8□□□□□ -0.04
TRIM28-215ENST00000601150 FUT1P19526 365 aa14.8□□□□□ -0.04
TRIM28-215ENST00000601150 DNASE1P24855 282 aa14.8□□□□□ -0.04
TRIM28-215ENST00000601150 ROR2Q01974 943 aaKnown RBP14.8□□□□□ -0.04
TRIM28-215ENST00000601150 C1QTNF12Q5T7M4 302 aa14.8□□□□□ -0.04
TRIM28-215ENST00000601150 HMBOX1Q6NT76 420 aa14.8□□□□□ -0.04
TRIM28-215ENST00000601150 RINLQ6ZS11 566 aa14.8□□□□□ -0.04
TRIM28-215ENST00000601150 TRPM8Q7Z2W7 1104 aa14.8□□□□□ -0.04
TRIM28-215ENST00000601150 GPR137CQ8N3F9 429 aa14.8□□□□□ -0.04
TRIM28-215ENST00000601150 FAM86B1Q8N7N1 296 aa14.8□□□□□ -0.04
TRIM28-215ENST00000601150 OR52N5Q8NH56 324 aa14.8□□□□□ -0.04
TRIM28-215ENST00000601150 LIPHQ8WWY8 451 aa14.8□□□□□ -0.04
TRIM28-215ENST00000601150 PYURFQ96I23 114 aa14.8□□□□□ -0.04
TRIM28-215ENST00000601150 TXNDC15Q96J42 360 aa14.8□□□□□ -0.04
TRIM28-215ENST00000601150 EMC6Q9BV81 110 aa14.8□□□□□ -0.04
TRIM28-215ENST00000601150 ANKRD19PQ9H560 264 aa14.8□□□□□ -0.04
TRIM28-215ENST00000601150 SLC17A5Q9NRA2 495 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms