RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 NAAAQ02083 359 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 LARS2Q15031 903 aaKnown RBP10.87□□□□□ -0.67
TRIM28-212ENST00000597995 OR7A5Q15622 319 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 CARTPTQ16568 116 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 CR1LQ2VPA4 569 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 GLIPR1L2Q4G1C9 344 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 ZNF311Q5JNZ3 666 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 GCNT6Q5T4J0 391 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 CREB3L2Q70SY1 520 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 RETREG3Q86VR2 466 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 RFLNBQ8N5W9 214 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 ANKS4BQ8N8V4 417 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 OR4F15Q8NGB8 312 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 BBS10Q8TAM1 723 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 NEU4Q8WWR8 484 aaPredicted RBP10.87□□□□□ -0.67
TRIM28-212ENST00000597995 BCL2L2Q92843 193 aaPredicted RBP10.87□□□□□ -0.67
TRIM28-212ENST00000597995 HPS1Q92902 700 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 WFDC6Q9BQY6 131 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 CPPED1Q9BRF8 314 aaPredicted RBP10.87□□□□□ -0.67
TRIM28-212ENST00000597995 TAPBPLQ9BX59 468 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 RAD21L1Q9H4I0 556 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 NPHS2Q9NP85 383 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 ARGLU1Q9NWB6 273 aaPredicted RBP10.87□□□□□ -0.67
TRIM28-212ENST00000597995 ZNF446Q9NWS9 450 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 ZNF232Q9UNY5 417 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 IFT52Q9Y366 437 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 STAMBPO95630 424 aa10.86□□□□□ -0.67
TRIM28-212ENST00000597995 LGI1O95970 557 aa10.86□□□□□ -0.67
TRIM28-212ENST00000597995 ERCC1P07992 297 aaPredicted RBP10.86□□□□□ -0.67
TRIM28-212ENST00000597995 TACSTD2P09758 323 aa10.86□□□□□ -0.67
TRIM28-212ENST00000597995 ETS2P15036 469 aa10.86□□□□□ -0.67
TRIM28-212ENST00000597995 NCF2P19878 526 aaPredicted RBP10.86□□□□□ -0.67
TRIM28-212ENST00000597995 HTR2AP28223 471 aa10.86□□□□□ -0.67
TRIM28-212ENST00000597995 CDK6Q00534 326 aa10.86□□□□□ -0.67
TRIM28-212ENST00000597995 EGR4Q05215 589 aa10.86□□□□□ -0.67
TRIM28-212ENST00000597995 SELPLGQ14242 412 aa10.86□□□□□ -0.67
TRIM28-212ENST00000597995 ZSWIM7Q19AV6 140 aa10.86□□□□□ -0.67
TRIM28-212ENST00000597995 RUNDC3AQ59EK9 446 aa10.86□□□□□ -0.67
TRIM28-212ENST00000597995 UGT2A3Q6UWM9 527 aa10.86□□□□□ -0.67
TRIM28-212ENST00000597995 GPAT4Q86UL3 456 aa10.86□□□□□ -0.67
TRIM28-212ENST00000597995 ANKK1Q8NFD2 765 aa10.86□□□□□ -0.67
TRIM28-212ENST00000597995 NUP37Q8NFH4 326 aa10.86□□□□□ -0.67
TRIM28-212ENST00000597995 PTDSS2Q9BVG9 487 aa10.86□□□□□ -0.67
TRIM28-212ENST00000597995 LINC00470Q9BZP3 86 aa10.86□□□□□ -0.67
TRIM28-212ENST00000597995 ZNF442Q9H7R0 627 aa10.86□□□□□ -0.67
TRIM28-212ENST00000597995 TMEM247A6NEH6 219 aa10.85□□□□□ -0.67
TRIM28-212ENST00000597995 A8MVM7 634 aa10.85□□□□□ -0.67
TRIM28-212ENST00000597995 TCF21O43680 179 aa10.85□□□□□ -0.67
TRIM28-212ENST00000597995 TPST2O60704 377 aa10.85□□□□□ -0.67
TRIM28-212ENST00000597995 IGKV3-15P01624 115 aa10.85□□□□□ -0.67
TRIM28-212ENST00000597995 CECR9P0C854 216 aa10.85□□□□□ -0.67
TRIM28-212ENST00000597995 DAOP14920 347 aa10.85□□□□□ -0.67
TRIM28-212ENST00000597995 PRKAR1BP31321 381 aa10.85□□□□□ -0.67
TRIM28-212ENST00000597995 SELENOPP49908 381 aa10.85□□□□□ -0.67
TRIM28-212ENST00000597995 CHN2P52757 468 aa10.85□□□□□ -0.67
TRIM28-212ENST00000597995 SH3BGRP55822 239 aaPredicted RBP10.85□□□□□ -0.67
TRIM28-212ENST00000597995 COPZ1P61923 177 aa10.85□□□□□ -0.67
TRIM28-212ENST00000597995 REEP3Q6NUK4 255 aa10.85□□□□□ -0.67
TRIM28-212ENST00000597995 DHRS4L2Q6PKH6 230 aa10.85□□□□□ -0.67
TRIM28-212ENST00000597995 VHLLQ6RSH7 139 aa10.85□□□□□ -0.67
TRIM28-212ENST00000597995 PTOV1Q86YD1 416 aa10.85□□□□□ -0.67
TRIM28-212ENST00000597995 DPP10Q8N608 796 aa10.85□□□□□ -0.67
TRIM28-212ENST00000597995 SLC35B4Q969S0 331 aa10.85□□□□□ -0.67
TRIM28-212ENST00000597995 DOK1Q99704 481 aa10.85□□□□□ -0.67
TRIM28-212ENST00000597995 SOX7Q9BT81 388 aa10.85□□□□□ -0.67
TRIM28-212ENST00000597995 TMEM38AQ9H6F2 299 aa10.85□□□□□ -0.67
TRIM28-212ENST00000597995 TMEFF2Q9UIK5 374 aaPredicted RBP10.85□□□□□ -0.67
TRIM28-212ENST00000597995 RASD1Q9Y272 281 aa10.85□□□□□ -0.67
TRIM28-212ENST00000597995 LRP5LA4QPB2 252 aa10.84□□□□□ -0.67
TRIM28-212ENST00000597995 C5orf58C9J3I9 102 aa10.84□□□□□ -0.67
TRIM28-212ENST00000597995 FTCDNL1E5RQL4 147 aa10.84□□□□□ -0.67
TRIM28-212ENST00000597995 RPL36A-HNRNPH2H7BZ11 118 aa10.84□□□□□ -0.67
TRIM28-212ENST00000597995 LILRA1O75019 489 aa10.84□□□□□ -0.67
TRIM28-212ENST00000597995 CBR1P16152 277 aa10.84□□□□□ -0.67
TRIM28-212ENST00000597995 NPR2P20594 1047 aa10.84□□□□□ -0.67
TRIM28-212ENST00000597995 PPIBP23284 216 aaKnown RBP10.84□□□□□ -0.67
TRIM28-212ENST00000597995 CALCRP30988 508 aa10.84□□□□□ -0.67
TRIM28-212ENST00000597995 HGFACQ04756 655 aa10.84□□□□□ -0.67
TRIM28-212ENST00000597995 SCARB2Q14108 478 aa10.84□□□□□ -0.67
TRIM28-212ENST00000597995 C1orf140Q5VVS0 124 aa10.84□□□□□ -0.67
TRIM28-212ENST00000597995 CGB2Q6NT52 195 aa10.84□□□□□ -0.67
TRIM28-212ENST00000597995 NIPAL3Q6P499 406 aa10.84□□□□□ -0.67
TRIM28-212ENST00000597995 C6orf89Q6UWU4 347 aa10.84□□□□□ -0.67
TRIM28-212ENST00000597995 LINGO2Q7L985 606 aa10.84□□□□□ -0.67
TRIM28-212ENST00000597995 EPHX4Q8IUS5 362 aa10.84□□□□□ -0.67
TRIM28-212ENST00000597995 ZNF786Q8N393 782 aa10.84□□□□□ -0.67
TRIM28-212ENST00000597995 LINC01356Q8N9X3 169 aa10.84□□□□□ -0.67
TRIM28-212ENST00000597995 IL17RDQ8NFM7 739 aa10.84□□□□□ -0.67
TRIM28-212ENST00000597995 KTI12Q96EK9 354 aaPredicted RBP10.84□□□□□ -0.67
TRIM28-212ENST00000597995 C1orf159Q96HA4 380 aa10.84□□□□□ -0.67
TRIM28-212ENST00000597995 ANKRD27Q96NW4 1050 aa10.84□□□□□ -0.67
TRIM28-212ENST00000597995 ALKBH3Q96Q83 286 aaPredicted RBP10.84□□□□□ -0.67
TRIM28-212ENST00000597995 CGREF1Q99674 301 aa10.84□□□□□ -0.67
TRIM28-212ENST00000597995 RABEP2Q9H5N1 569 aa10.84□□□□□ -0.67
TRIM28-212ENST00000597995 ADPRHL2Q9NX46 363 aa10.84□□□□□ -0.67
TRIM28-212ENST00000597995 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.84□□□□□ -0.67
TRIM28-212ENST00000597995 LEF1Q9UJU2 399 aaPredicted RBP10.84□□□□□ -0.67
TRIM28-212ENST00000597995 RCE1Q9Y256 329 aa10.84□□□□□ -0.67
TRIM28-212ENST00000597995 IGKV1D-42A0A075B6H8 117 aa10.83□□□□□ -0.68
TRIM28-212ENST00000597995 A0A0G2JND7 137 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms