RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 SEC61A2Q9H9S3 476 aa12.09□□□□□ -0.47
VMP1-209ENST00000588915 BCL2L10Q9HD36 194 aa12.09□□□□□ -0.47
VMP1-209ENST00000588915 DYNLRB1Q9NP97 96 aa12.09□□□□□ -0.47
VMP1-209ENST00000588915 PNPOQ9NVS9 261 aa12.09□□□□□ -0.47
VMP1-209ENST00000588915 B3GAT1Q9P2W7 334 aa12.09□□□□□ -0.47
VMP1-209ENST00000588915 METRNQ9UJH8 293 aa12.09□□□□□ -0.47
VMP1-209ENST00000588915 B4DSR2 109 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 HDAC3O15379 428 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 ANP32DO95626 131 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 IGFBP1P08833 259 aaPredicted RBP12.08□□□□□ -0.48
VMP1-209ENST00000588915 CELA3BP08861 270 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 IDO1P14902 403 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 IFNGR1P15260 489 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 BGNP21810 368 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 NR4A1P22736 598 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 RPS5P46782 204 aaKnown RBP12.08□□□□□ -0.48
VMP1-209ENST00000588915 BST1Q10588 318 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 SCGB2A2Q13296 93 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 C1DQ13901 141 aaKnown RBP12.08□□□□□ -0.48
VMP1-209ENST00000588915 MFSD13AQ14CX5 517 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 CEACAM16Q2WEN9 425 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 KRT71Q3SY84 523 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 SLC9B1Q4ZJI4 515 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 PDCD4Q53EL6 469 aaKnown RBP12.08□□□□□ -0.48
VMP1-209ENST00000588915 ZNF311Q5JNZ3 666 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 REP15Q6BDI9 236 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 WDR93Q6P2C0 686 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 H1FNTQ75WM6 255 aaPredicted RBP12.08□□□□□ -0.48
VMP1-209ENST00000588915 ZNF627Q7L945 461 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 ZCCHC24Q8N2G6 241 aaKnown RBP12.08□□□□□ -0.48
VMP1-209ENST00000588915 KDM8Q8N371 416 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 MREGQ8N565 214 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 LSMEM1Q8N8F7 131 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 ADPRHL1Q8NDY3 354 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 OR6S1Q8NH40 331 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 SLC38A4Q969I6 547 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 TMEM19Q96HH6 336 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 CRLF2Q9HC73 371 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 B3GNT2Q9NY97 397 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 SPEF1Q9Y4P9 236 aa12.08□□□□□ -0.48
VMP1-209ENST00000588915 SH3PXD2BA1X283 911 aa12.07□□□□□ -0.48
VMP1-209ENST00000588915 SYNGR3O43761 229 aa12.07□□□□□ -0.48
VMP1-209ENST00000588915 SLC22A3O75751 556 aa12.07□□□□□ -0.48
VMP1-209ENST00000588915 ADRA2AP08913 450 aa12.07□□□□□ -0.48
VMP1-209ENST00000588915 ITGA2P17301 1181 aa12.07□□□□□ -0.48
VMP1-209ENST00000588915 EPHA3P29320 983 aa12.07□□□□□ -0.48
VMP1-209ENST00000588915 IL2RGP31785 369 aa12.07□□□□□ -0.48
VMP1-209ENST00000588915 GLRXP35754 106 aa12.07□□□□□ -0.48
VMP1-209ENST00000588915 SNTB2Q13425 540 aaKnown RBP12.07□□□□□ -0.48
VMP1-209ENST00000588915 ATG16L1Q676U5 607 aa12.07□□□□□ -0.48
VMP1-209ENST00000588915 MDP1Q86V88 176 aa12.07□□□□□ -0.48
VMP1-209ENST00000588915 MYPOPQ86VE0 399 aaPredicted RBP12.07□□□□□ -0.48
VMP1-209ENST00000588915 SNX32Q86XE0 403 aa12.07□□□□□ -0.48
VMP1-209ENST00000588915 TMEM123Q8N131 208 aa12.07□□□□□ -0.48
VMP1-209ENST00000588915 DNAJA4Q8WW22 397 aaPredicted RBP12.07□□□□□ -0.48
VMP1-209ENST00000588915 MRPL24Q96A35 216 aaKnown RBP12.07□□□□□ -0.48
VMP1-209ENST00000588915 KTI12Q96EK9 354 aaPredicted RBP12.07□□□□□ -0.48
VMP1-209ENST00000588915 ITCHQ96J02 903 aa12.07□□□□□ -0.48
VMP1-209ENST00000588915 OR2M2Q96R28 347 aa12.07□□□□□ -0.48
VMP1-209ENST00000588915 SNX18Q96RF0 628 aa12.07□□□□□ -0.48
VMP1-209ENST00000588915 RAD21L1Q9H4I0 556 aa12.07□□□□□ -0.48
VMP1-209ENST00000588915 NOX3Q9HBY0 568 aa12.07□□□□□ -0.48
VMP1-209ENST00000588915 SLC6A13Q9NSD5 602 aa12.07□□□□□ -0.48
VMP1-209ENST00000588915 ZIM2Q9NZV7 527 aa12.07□□□□□ -0.48
VMP1-209ENST00000588915 RPS6KB2Q9UBS0 482 aa12.07□□□□□ -0.48
VMP1-209ENST00000588915 M0R233 179 aa12.06□□□□□ -0.48
VMP1-209ENST00000588915 BMP2P12643 396 aa12.06□□□□□ -0.48
VMP1-209ENST00000588915 ZNF35P13682 527 aa12.06□□□□□ -0.48
VMP1-209ENST00000588915 ETS2P15036 469 aa12.06□□□□□ -0.48
VMP1-209ENST00000588915 ACHEP22303 614 aa12.06□□□□□ -0.48
VMP1-209ENST00000588915 GRPRP30550 384 aa12.06□□□□□ -0.48
VMP1-209ENST00000588915 CAPZA2P47755 286 aa12.06□□□□□ -0.48
VMP1-209ENST00000588915 TMEM33P57088 247 aa12.06□□□□□ -0.48
VMP1-209ENST00000588915 MRPS11P82912 194 aaKnown RBP12.06□□□□□ -0.48
VMP1-209ENST00000588915 NPRL3Q12980 569 aa12.06□□□□□ -0.48
VMP1-209ENST00000588915 FADDQ13158 208 aa12.06□□□□□ -0.48
VMP1-209ENST00000588915 MPP2Q14168 576 aa12.06□□□□□ -0.48
VMP1-209ENST00000588915 TNFAIP8L3Q5GJ75 292 aa12.06□□□□□ -0.48
VMP1-209ENST00000588915 FAM91A1Q658Y4 838 aa12.06□□□□□ -0.48
VMP1-209ENST00000588915 C12orf54Q6X4T0 127 aa12.06□□□□□ -0.48
VMP1-209ENST00000588915 GLCCI1Q86VQ1 547 aa12.06□□□□□ -0.48
VMP1-209ENST00000588915 LSRQ86X29 649 aaPredicted RBP12.06□□□□□ -0.48
VMP1-209ENST00000588915 CDK20Q8IZL9 346 aa12.06□□□□□ -0.48
VMP1-209ENST00000588915 TEX29Q8N6K0 151 aa12.06□□□□□ -0.48
VMP1-209ENST00000588915 BBS10Q8TAM1 723 aa12.06□□□□□ -0.48
VMP1-209ENST00000588915 TAAR8Q969N4 342 aa12.06□□□□□ -0.48
VMP1-209ENST00000588915 ZNF837Q96EG3 531 aaPredicted RBP12.06□□□□□ -0.48
VMP1-209ENST00000588915 WDR55Q9H6Y2 383 aaPredicted RBP12.06□□□□□ -0.48
VMP1-209ENST00000588915 B3GAT2Q9NPZ5 323 aa12.06□□□□□ -0.48
VMP1-209ENST00000588915 THAP1Q9NVV9 213 aa12.06□□□□□ -0.48
VMP1-209ENST00000588915 REV1Q9UBZ9 1251 aa12.06□□□□□ -0.48
VMP1-209ENST00000588915 FBXL3Q9UKT7 428 aa12.06□□□□□ -0.48
VMP1-209ENST00000588915 CORINQ9Y5Q5 1042 aa12.06□□□□□ -0.48
VMP1-209ENST00000588915 TRAV36DV7A0A075B6V5 113 aa12.05□□□□□ -0.48
VMP1-209ENST00000588915 ZNF503-AS2A6NEH8 195 aa12.05□□□□□ -0.48
VMP1-209ENST00000588915 M0R082 166 aa12.05□□□□□ -0.48
VMP1-209ENST00000588915 TRAF3IP2O43734 574 aaPredicted RBP12.05□□□□□ -0.48
VMP1-209ENST00000588915 TFP02787 698 aa12.05□□□□□ -0.48
VMP1-209ENST00000588915 PRKAR1BP31321 381 aa12.05□□□□□ -0.48
VMP1-209ENST00000588915 RPS23P62266 143 aaKnown RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms