RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ROBO4Q8WZ75 1007 aa22.46■■□□□ 1.19
SHMT1-207ENST00000580002 TXNDC15Q96J42 360 aa22.46■■□□□ 1.19
SHMT1-207ENST00000580002 GPX7Q96SL4 187 aaPredicted RBP22.46■■□□□ 1.19
SHMT1-207ENST00000580002 TIMP4Q99727 224 aa22.46■■□□□ 1.19
SHMT1-207ENST00000580002 POLDIP3Q9BY77 421 aaKnown RBP22.46■■□□□ 1.19
SHMT1-207ENST00000580002 INIPQ9NRY2 104 aa22.46■■□□□ 1.19
SHMT1-207ENST00000580002 PNPLA3Q9NST1 481 aa22.46■■□□□ 1.19
SHMT1-207ENST00000580002 TEX13CA0A0J9YWL9 993 aa22.45■■□□□ 1.19
SHMT1-207ENST00000580002 ENTPD6O75354 484 aa22.45■■□□□ 1.19
SHMT1-207ENST00000580002 OR6A2O95222 327 aa22.45■■□□□ 1.19
SHMT1-207ENST00000580002 ZNF708P17019 499 aa22.45■■□□□ 1.19
SHMT1-207ENST00000580002 GRK5P34947 590 aa22.45■■□□□ 1.19
SHMT1-207ENST00000580002 CHN2P52757 468 aa22.45■■□□□ 1.19
SHMT1-207ENST00000580002 SLC35A1P78382 337 aa22.45■■□□□ 1.19
SHMT1-207ENST00000580002 H3F3AP84243 136 aa22.45■■□□□ 1.19
SHMT1-207ENST00000580002 PUDPQ08623 228 aa22.45■■□□□ 1.19
SHMT1-207ENST00000580002 MELKQ14680 651 aa22.45■■□□□ 1.19
SHMT1-207ENST00000580002 MFSD13AQ14CX5 517 aa22.45■■□□□ 1.19
SHMT1-207ENST00000580002 NHLRC1Q6VVB1 395 aa22.45■■□□□ 1.19
SHMT1-207ENST00000580002 DEPDC4Q8N2C3 294 aa22.45■■□□□ 1.19
SHMT1-207ENST00000580002 SCAIQ8N9R8 606 aa22.45■■□□□ 1.19
SHMT1-207ENST00000580002 BPIFB6Q8NFQ5 453 aa22.45■■□□□ 1.19
SHMT1-207ENST00000580002 OR52E2Q8NGJ4 325 aa22.45■■□□□ 1.19
SHMT1-207ENST00000580002 HSPE1-MOB4S4R3N1 261 aa22.45■■□□□ 1.19
SHMT1-207ENST00000580002 MAP1BP46821 2468 aaKnown RBP22.45■■□□□ 1.19
SHMT1-207ENST00000580002 NOS3P29474 1203 aa22.45■■□□□ 1.18
SHMT1-207ENST00000580002 ACKR1Q16570 336 aa22.45■■□□□ 1.18
SHMT1-207ENST00000580002 ESPNLQ6ZVH7 1005 aa22.45■■□□□ 1.18
SHMT1-207ENST00000580002 SDR9C7Q8NEX9 313 aa22.45■■□□□ 1.18
SHMT1-207ENST00000580002 HINT3Q9NQE9 182 aaKnown RBP22.45■■□□□ 1.18
SHMT1-207ENST00000580002 ITPR1Q14643 2758 aa22.45■■□□□ 1.18
SHMT1-207ENST00000580002 TLN1Q9Y490 2541 aaKnown RBP22.44■■□□□ 1.18
SHMT1-207ENST00000580002 GJE1A6NN92 205 aa22.44■■□□□ 1.18
SHMT1-207ENST00000580002 H7C1C5 153 aa22.44■■□□□ 1.18
SHMT1-207ENST00000580002 SMAD9O15198 467 aaKnown RBP22.44■■□□□ 1.18
SHMT1-207ENST00000580002 IGHG3P01860 377 aa22.44■■□□□ 1.18
SHMT1-207ENST00000580002 CDKN2AP42771 156 aaKnown RBP22.44■■□□□ 1.18
SHMT1-207ENST00000580002 LCN6P62502 163 aa22.44■■□□□ 1.18
SHMT1-207ENST00000580002 RUNX1T1Q06455 604 aa22.44■■□□□ 1.18
SHMT1-207ENST00000580002 ZP4Q12836 540 aa22.44■■□□□ 1.18
SHMT1-207ENST00000580002 CRMP1Q14194 572 aa22.44■■□□□ 1.18
SHMT1-207ENST00000580002 LSM14AQ8ND56 463 aaKnown RBP22.44■■□□□ 1.18
SHMT1-207ENST00000580002 OR8J1Q8NGP2 316 aa22.44■■□□□ 1.18
SHMT1-207ENST00000580002 TMEM163Q8TC26 289 aa22.44■■□□□ 1.18
SHMT1-207ENST00000580002 PTP4A1Q93096 173 aa22.44■■□□□ 1.18
SHMT1-207ENST00000580002 OTULINQ96BN8 352 aa22.44■■□□□ 1.18
SHMT1-207ENST00000580002 DTNBP1Q96EV8 351 aa22.44■■□□□ 1.18
SHMT1-207ENST00000580002 FN3KQ9H479 309 aa22.44■■□□□ 1.18
SHMT1-207ENST00000580002 CMC2Q9NRP2 79 aa22.44■■□□□ 1.18
SHMT1-207ENST00000580002 MED29Q9NX70 200 aa22.44■■□□□ 1.18
SHMT1-207ENST00000580002 B3GALT5Q9Y2C3 310 aa22.44■■□□□ 1.18
SHMT1-207ENST00000580002 PKD1L2Q7Z442 2459 aa22.44■■□□□ 1.18
SHMT1-207ENST00000580002 TMEM8BA6NDV4 472 aa22.43■■□□□ 1.18
SHMT1-207ENST00000580002 AQP7P3A6NL99 342 aa22.43■■□□□ 1.18
SHMT1-207ENST00000580002 HMGN1P05114 100 aa22.43■■□□□ 1.18
SHMT1-207ENST00000580002 CLUP10909 449 aa22.43■■□□□ 1.18
SHMT1-207ENST00000580002 RPS6KA3P51812 740 aa22.43■■□□□ 1.18
SHMT1-207ENST00000580002 SNRPGP62308 76 aaKnown RBP22.43■■□□□ 1.18
SHMT1-207ENST00000580002 PIGFQ07326 219 aa22.43■■□□□ 1.18
SHMT1-207ENST00000580002 ANKDD1AQ495B1 522 aa22.43■■□□□ 1.18
SHMT1-207ENST00000580002 PAQR6Q6TCH4 344 aa22.43■■□□□ 1.18
SHMT1-207ENST00000580002 GPAT4Q86UL3 456 aa22.43■■□□□ 1.18
SHMT1-207ENST00000580002 CPOQ8IVL8 374 aa22.43■■□□□ 1.18
SHMT1-207ENST00000580002 WDYHV1Q96HA8 205 aa22.43■■□□□ 1.18
SHMT1-207ENST00000580002 LRR1Q96L50 414 aa22.43■■□□□ 1.18
SHMT1-207ENST00000580002 SLC38A2Q96QD8 506 aa22.43■■□□□ 1.18
SHMT1-207ENST00000580002 NMNAT3Q96T66 252 aa22.43■■□□□ 1.18
SHMT1-207ENST00000580002 LINC01387J3KSC0 135 aa22.43■■□□□ 1.18
SHMT1-207ENST00000580002 ARPC3O15145 178 aa22.43■■□□□ 1.18
SHMT1-207ENST00000580002 LYNP07948 512 aa22.43■■□□□ 1.18
SHMT1-207ENST00000580002 IFNGR1P15260 489 aa22.43■■□□□ 1.18
SHMT1-207ENST00000580002 CDH15P55291 814 aa22.43■■□□□ 1.18
SHMT1-207ENST00000580002 RAC3P60763 192 aa22.43■■□□□ 1.18
SHMT1-207ENST00000580002 POU3F1Q03052 451 aaPredicted RBP22.43■■□□□ 1.18
SHMT1-207ENST00000580002 MESTQ5EB52 335 aa22.43■■□□□ 1.18
SHMT1-207ENST00000580002 TMEM225Q6GV28 225 aa22.43■■□□□ 1.18
SHMT1-207ENST00000580002 RPUSD3Q6P087 351 aaKnown RBP22.43■■□□□ 1.18
SHMT1-207ENST00000580002 PLBD1Q6P4A8 553 aa22.43■■□□□ 1.18
SHMT1-207ENST00000580002 B3GLCTQ6Y288 498 aa22.43■■□□□ 1.18
SHMT1-207ENST00000580002 FAM26EQ8N5C1 309 aa22.43■■□□□ 1.18
SHMT1-207ENST00000580002 SLC37A3Q8NCC5 494 aa22.43■■□□□ 1.18
SHMT1-207ENST00000580002 ZNF775Q96BV0 537 aaPredicted RBP22.43■■□□□ 1.18
SHMT1-207ENST00000580002 NR1H4Q96RI1 486 aaPredicted RBP22.43■■□□□ 1.18
SHMT1-207ENST00000580002 DDOQ99489 341 aa22.43■■□□□ 1.18
SHMT1-207ENST00000580002 ATRXP46100 2492 aa22.42■■□□□ 1.18
SHMT1-207ENST00000580002 AGFG1P52594 562 aaKnown RBP22.42■■□□□ 1.18
SHMT1-207ENST00000580002 CSNK2A1P68400 391 aaPredicted RBP22.42■■□□□ 1.18
SHMT1-207ENST00000580002 KHDRBS1Q07666 443 aaKnown RBP eCLIP22.42■■□□□ 1.18
SHMT1-207ENST00000580002 ITGADQ13349 1161 aa22.42■■□□□ 1.18
SHMT1-207ENST00000580002 NPEPL1Q8NDH3 523 aa22.42■■□□□ 1.18
SHMT1-207ENST00000580002 ZNRF4Q8WWF5 429 aa22.42■■□□□ 1.18
SHMT1-207ENST00000580002 TRUB1Q8WWH5 349 aaKnown RBP22.42■■□□□ 1.18
SHMT1-207ENST00000580002 PLEKHA8Q96JA3 519 aa22.42■■□□□ 1.18
SHMT1-207ENST00000580002 ZNF582Q96NG8 517 aaPredicted RBP22.42■■□□□ 1.18
SHMT1-207ENST00000580002 EMC6Q9BV81 110 aa22.42■■□□□ 1.18
SHMT1-207ENST00000580002 PAK1IP1Q9NWT1 392 aaPredicted RBP22.42■■□□□ 1.18
SHMT1-207ENST00000580002 NBEAQ8NFP9 2946 aa22.42■■□□□ 1.18
SHMT1-207ENST00000580002 SVILO95425 2214 aa22.41■■□□□ 1.18
SHMT1-207ENST00000580002 KDM4EB2RXH2 506 aaPredicted RBP22.41■■□□□ 1.18
SHMT1-207ENST00000580002 SLC1A7O00341 560 aa22.41■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms