RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 FCGR2AP12318 317 aa9.6□□□□□ -0.87
SS18-213ENST00000579640 PTGS2P35354 604 aa9.6□□□□□ -0.87
SS18-213ENST00000579640 PTGER4P35408 488 aa9.6□□□□□ -0.87
SS18-213ENST00000579640 MYBPC1Q00872 1141 aa9.6□□□□□ -0.87
SS18-213ENST00000579640 PDK3Q15120 406 aa9.6□□□□□ -0.87
SS18-213ENST00000579640 ZNF691Q5VV52 312 aa9.6□□□□□ -0.87
SS18-213ENST00000579640 TMEM236Q5W0B7 351 aa9.6□□□□□ -0.87
SS18-213ENST00000579640 FAM205BPQ63HN1 556 aa9.6□□□□□ -0.87
SS18-213ENST00000579640 ABLIM2Q6H8Q1 611 aa9.6□□□□□ -0.87
SS18-213ENST00000579640 ACSM5Q6NUN0 579 aa9.6□□□□□ -0.87
SS18-213ENST00000579640 Q6ZPB1 254 aaPredicted RBP9.6□□□□□ -0.87
SS18-213ENST00000579640 FCRLAQ7L513 359 aa9.6□□□□□ -0.87
SS18-213ENST00000579640 HDDC2Q7Z4H3 204 aa9.6□□□□□ -0.87
SS18-213ENST00000579640 UEVLDQ8IX04 471 aa9.6□□□□□ -0.87
SS18-213ENST00000579640 C8orf59Q8N0T1 100 aaPredicted RBP9.6□□□□□ -0.87
SS18-213ENST00000579640 IQCF1Q8N6M8 205 aa9.6□□□□□ -0.87
SS18-213ENST00000579640 OR4Q3Q8NH05 313 aa9.6□□□□□ -0.87
SS18-213ENST00000579640 TRUB1Q8WWH5 349 aaKnown RBP9.6□□□□□ -0.87
SS18-213ENST00000579640 ZNF845Q96IR2 970 aaPredicted RBP9.6□□□□□ -0.87
SS18-213ENST00000579640 KATNB1Q9BVA0 655 aa9.6□□□□□ -0.87
SS18-213ENST00000579640 POLDIP3Q9BY77 421 aaKnown RBP9.6□□□□□ -0.87
SS18-213ENST00000579640 ENKD1Q9H0I2 346 aa9.6□□□□□ -0.87
SS18-213ENST00000579640 TXNIPQ9H3M7 391 aa9.6□□□□□ -0.87
SS18-213ENST00000579640 IMPAD1Q9NX62 359 aa9.6□□□□□ -0.87
SS18-213ENST00000579640 B3GAT1Q9P2W7 334 aa9.6□□□□□ -0.87
SS18-213ENST00000579640 IL20RAQ9UHF4 553 aa9.6□□□□□ -0.87
SS18-213ENST00000579640 TTLL8A6PVC2 850 aa9.59□□□□□ -0.87
SS18-213ENST00000579640 CYTIPO60759 359 aa9.59□□□□□ -0.87
SS18-213ENST00000579640 WISP2O76076 250 aa9.59□□□□□ -0.87
SS18-213ENST00000579640 IFNGP01579 166 aa9.59□□□□□ -0.87
SS18-213ENST00000579640 F13BP05160 661 aa9.59□□□□□ -0.87
SS18-213ENST00000579640 EDN3P14138 238 aa9.59□□□□□ -0.87
SS18-213ENST00000579640 ZNF43P17038 809 aa9.59□□□□□ -0.87
SS18-213ENST00000579640 MYF6P23409 242 aa9.59□□□□□ -0.87
SS18-213ENST00000579640 NOS3P29474 1203 aa9.59□□□□□ -0.87
SS18-213ENST00000579640 SDHAP31040 664 aa9.59□□□□□ -0.87
SS18-213ENST00000579640 DAP3P51398 398 aaKnown RBP9.59□□□□□ -0.87
SS18-213ENST00000579640 SLC16A1P53985 500 aa9.59□□□□□ -0.87
SS18-213ENST00000579640 HSF1Q00613 529 aa9.59□□□□□ -0.87
SS18-213ENST00000579640 C1DQ13901 141 aaKnown RBP9.59□□□□□ -0.87
SS18-213ENST00000579640 GTF2IRD2BQ6EKJ0 949 aa9.59□□□□□ -0.87
SS18-213ENST00000579640 FAM122BQ7Z309 247 aa9.59□□□□□ -0.87
SS18-213ENST00000579640 GTF2IRD2Q86UP8 949 aa9.59□□□□□ -0.87
SS18-213ENST00000579640 IGFN1Q86VF2 1251 aa9.59□□□□□ -0.87
SS18-213ENST00000579640 CCDC103Q8IW40 242 aa9.59□□□□□ -0.87
SS18-213ENST00000579640 CHERPQ8IWX8 916 aaKnown RBP9.59□□□□□ -0.87
SS18-213ENST00000579640 FAM81AQ8TBF8 368 aa9.59□□□□□ -0.87
SS18-213ENST00000579640 PLEKHA8Q96JA3 519 aa9.59□□□□□ -0.87
SS18-213ENST00000579640 ERMAPQ96PL5 475 aaPredicted RBP9.59□□□□□ -0.87
SS18-213ENST00000579640 UCN2Q96RP3 112 aa9.59□□□□□ -0.87
SS18-213ENST00000579640 TUBA1CQ9BQE3 449 aa9.59□□□□□ -0.87
SS18-213ENST00000579640 PRRG4Q9BZD6 226 aa9.59□□□□□ -0.87
SS18-213ENST00000579640 ASF1BQ9NVP2 202 aa9.59□□□□□ -0.87
SS18-213ENST00000579640 TNFRSF10DQ9UBN6 386 aa9.59□□□□□ -0.87
SS18-213ENST00000579640 GRHPRQ9UBQ7 328 aa9.59□□□□□ -0.87
SS18-213ENST00000579640 KLHL21Q9UJP4 597 aa9.59□□□□□ -0.87
SS18-213ENST00000579640 IER3IP1Q9Y5U9 82 aa9.59□□□□□ -0.87
SS18-213ENST00000579640 CLCA1A8K7I4 914 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 ZNF814B7Z6K7 855 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 SURF4O15260 269 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 ATXN7O15265 892 aaPredicted RBP9.59□□□□□ -0.88
SS18-213ENST00000579640 AKAP8O43823 692 aaKnown RBP9.59□□□□□ -0.88
SS18-213ENST00000579640 WDR1O75083 606 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 HOXD4P09016 255 aaPredicted RBP9.59□□□□□ -0.88
SS18-213ENST00000579640 GABRA1P14867 456 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 PCYT1AP49585 367 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 RPL27P61353 136 aaKnown RBP9.59□□□□□ -0.88
SS18-213ENST00000579640 ERVK-25P63136 954 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 POU3F1Q03052 451 aaPredicted RBP9.59□□□□□ -0.88
SS18-213ENST00000579640 RBPJQ06330 500 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 MED21Q13503 144 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 SLC17A1Q14916 467 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 PON3Q15166 354 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 RNPS1Q15287 305 aaKnown RBP9.59□□□□□ -0.88
SS18-213ENST00000579640 SNAPC1Q16533 368 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 ACKR1Q16570 336 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 C3AR1Q16581 482 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 SLC35D2Q76EJ3 337 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 FGD2Q7Z6J4 655 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 THAP5Q7Z6K1 395 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 ADGRE4PQ86SQ3 457 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 GPAT4Q86UL3 456 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 KDM8Q8N371 416 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 OR9K2Q8NGE7 335 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 OR8J1Q8NGP2 316 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 FAM57AQ8TBR7 257 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 RNF128Q8TEB7 428 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 ROBO4Q8WZ75 1007 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 MUS81Q96NY9 551 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 GP6Q9HCN6 339 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 CMC2Q9NRP2 79 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 TVP23BQ9NYZ1 205 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 KLHL9Q9P2J3 617 aa9.59□□□□□ -0.88
SS18-213ENST00000579640 KMT2BQ9UMN6 2715 aaPredicted RBP9.58□□□□□ -0.88
SS18-213ENST00000579640 IGHV3-15A0A0B4J1V0 119 aa9.58□□□□□ -0.88
SS18-213ENST00000579640 A6NIZ1 184 aa9.58□□□□□ -0.88
SS18-213ENST00000579640 SLC22A20A6NK97 555 aa9.58□□□□□ -0.88
SS18-213ENST00000579640 FIGNL2A6NMB9 653 aa9.58□□□□□ -0.88
SS18-213ENST00000579640 RIIAD1A6NNX1 92 aa9.58□□□□□ -0.88
SS18-213ENST00000579640 M0R3G1 203 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms