RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 UTP23Q9BRU9 249 aaKnown RBP7.21□□□□□ -1.26
VPS39-213ENST00000570062 NAA11Q9BSU3 229 aaPredicted RBP7.21□□□□□ -1.26
VPS39-213ENST00000570062 KRTAP4-8Q9BYQ9 185 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 RNF32Q9H0A6 362 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 AMBNQ9NP70 447 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 INIPQ9NRY2 104 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 ALKBH4Q9NXW9 302 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 DNAJC27Q9NZQ0 273 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 MED11Q9P086 117 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 TNFRSF10DQ9UBN6 386 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 CAB39Q9Y376 341 aaPredicted RBP7.21□□□□□ -1.26
VPS39-213ENST00000570062 NOX1Q9Y5S8 564 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 IER3IP1Q9Y5U9 82 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 TMEM14AQ9Y6G1 99 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 ADAMTS20P59510 1910 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 LOC101059948A0A1B0GTJ6 334 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 SPAARA0A1B0GVQ0 90 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 TMEM72A0PK05 275 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 TRIM64BA6NI03 449 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 HSPB2A8KAH6 182 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 TLX3O43711 291 aaPredicted RBP7.2□□□□□ -1.26
VPS39-213ENST00000570062 AKAP8O43823 692 aaKnown RBP7.2□□□□□ -1.26
VPS39-213ENST00000570062 GABARAPO95166 117 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 PPP1R3DO95685 299 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 IGHMP01871 453 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 ADORA3P0DMS8 318 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 LIFP15018 202 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 CD36P16671 472 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 MST1P26927 711 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 CRABP1P29762 137 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 GATA4P43694 442 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 RPS5P46782 204 aaKnown RBP7.2□□□□□ -1.26
VPS39-213ENST00000570062 NOVA1P51513 510 aaKnown RBP7.2□□□□□ -1.26
VPS39-213ENST00000570062 NUDT6P53370 316 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 WNT4P56705 351 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 RPS7P62081 194 aaKnown RBP7.2□□□□□ -1.26
VPS39-213ENST00000570062 ACTA2P62736 377 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 ACTG2P63267 376 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 CSNK2A1P68400 391 aaPredicted RBP7.2□□□□□ -1.26
VPS39-213ENST00000570062 SLC35A1P78382 337 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 OC90Q02509 493 aaPredicted RBP7.2□□□□□ -1.26
VPS39-213ENST00000570062 MED22Q15528 200 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 HSPB2Q16082 182 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 ARMCX4Q5H9R4 360 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 PDSS1Q5T2R2 415 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 AGAP7PQ5VUJ5 663 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 C16orf47Q6ZP98 133 aaPredicted RBP7.2□□□□□ -1.26
VPS39-213ENST00000570062 PXKQ7Z7A4 578 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 ARIH2OSQ8N7S6 290 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 SLC37A3Q8NCC5 494 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 MOSPD2Q8NHP6 518 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 PTP4A1Q93096 173 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 TMIGD2Q96BF3 282 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 OTULINQ96BN8 352 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 LGALS12Q96DT0 336 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 YIPF6Q96EC8 236 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 ZHX1-C8orf76Q96EF9 292 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 AGAP4Q96P64 663 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 FAM173AQ9BQD7 235 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 FUNDC2Q9BWH2 189 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 RTN4RQ9BZR6 473 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 TXNIPQ9H3M7 391 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 CXorf56Q9H5V9 222 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 HINT3Q9NQE9 182 aaKnown RBP7.2□□□□□ -1.26
VPS39-213ENST00000570062 PAQR5Q9NXK6 330 aaPredicted RBP7.2□□□□□ -1.26
VPS39-213ENST00000570062 ENPP5Q9UJA9 477 aa7.2□□□□□ -1.26
VPS39-213ENST00000570062 RPH3AQ9Y2J0 694 aaPredicted RBP7.2□□□□□ -1.26
VPS39-213ENST00000570062 FLNBO75369 2602 aaKnown RBP7.2□□□□□ -1.26
VPS39-213ENST00000570062 GCN1Q92616 2671 aaKnown RBP7.2□□□□□ -1.26
VPS39-213ENST00000570062 ADAMTS9Q9P2N4 1935 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 A0A1W2PNU3 283 aaPredicted RBP7.19□□□□□ -1.26
VPS39-213ENST00000570062 A0A1W2PNV4 684 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 DAPL1A0PJW8 107 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 A6NJY4 79 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 FTCDNL1E5RQL4 147 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 KLRC4-KLRK1H3BQV0 150 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 PLPP3O14495 311 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 ADAM10O14672 748 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 RNF13O43567 381 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 ZNF354AO60765 605 aaPredicted RBP7.19□□□□□ -1.26
VPS39-213ENST00000570062 GLCEO94923 617 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 INMTO95050 263 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 PMS2P2O95744 297 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 BCL10O95999 233 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 TACSTD2P09758 323 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 FAM157BP0CG42 384 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 TFPIP10646 304 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 HIST1H1CP16403 213 aaKnown RBP7.19□□□□□ -1.26
VPS39-213ENST00000570062 ITGA3P26006 1051 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 DPP4P27487 766 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 UGT2B10P36537 528 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 AQP2P41181 271 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 RGS6P49758 472 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 DIO1P49895 249 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 GP2P55259 537 aaKnown RBP7.19□□□□□ -1.26
VPS39-213ENST00000570062 FOXL2P58012 376 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 FXYD6P3P58550 94 aa7.19□□□□□ -1.26
VPS39-213ENST00000570062 RPL27P61353 136 aaKnown RBP7.19□□□□□ -1.26
VPS39-213ENST00000570062 RPS18P62269 152 aaKnown RBP7.19□□□□□ -1.26
VPS39-213ENST00000570062 RAC1P63000 192 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms