RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 NGFRP08138 427 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 UGT2B7P16662 529 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 DYRK1AQ13627 763 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 FAM3CQ92520 227 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 SEC22AQ96IW7 307 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 ZFYVE21Q9BQ24 234 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 TIMM29Q9BSF4 260 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 TEX101Q9BY14 249 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 HDAC8Q9BY41 377 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 TAS2R3Q9NYW6 316 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 THBS1P07996 1170 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 TACSTD2P09758 323 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 S100A11P31949 105 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 RAP2BP61225 183 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 TMEM81Q6P7N7 255 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 BAIAP2L2Q6UXY1 529 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 TMPRSS11FQ6ZWK6 438 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 ZNF227Q86WZ6 799 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 PDZD9Q8IXQ8 264 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 OR6V1Q8N148 313 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 CASTOR1Q8WTX7 329 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 ST8SIA2Q92186 375 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 TRIM43Q96BQ3 446 aaPredicted RBP13.28□□□□□ -0.28
VPS35-210ENST00000568784 C10orf90Q96M02 699 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 MNTQ99583 582 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 ZNF471Q9BX82 626 aaPredicted RBP13.28□□□□□ -0.28
VPS35-210ENST00000568784 C14orf105Q9NVL8 296 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 ACTR10Q9NZ32 417 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 LRIT1Q9P2V4 623 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 OR5V1Q9UGF6 321 aa13.28□□□□□ -0.28
VPS35-210ENST00000568784 NOP16Q9Y3C1 178 aaKnown RBP13.28□□□□□ -0.28
VPS35-210ENST00000568784 RPS10-NUDT3A0A1W2PQS6 291 aa13.27□□□□□ -0.28
VPS35-210ENST00000568784 F5H5P2 479 aa13.27□□□□□ -0.28
VPS35-210ENST00000568784 H3BUI4 141 aa13.27□□□□□ -0.28
VPS35-210ENST00000568784 AKR1C2P52895 323 aa13.27□□□□□ -0.28
VPS35-210ENST00000568784 AKR1C1Q04828 323 aa13.27□□□□□ -0.28
VPS35-210ENST00000568784 LRRC69Q6ZNQ3 347 aa13.27□□□□□ -0.28
VPS35-210ENST00000568784 JAGN1Q8N5M9 183 aa13.27□□□□□ -0.28
VPS35-210ENST00000568784 CHST4Q8NCG5 386 aa13.27□□□□□ -0.28
VPS35-210ENST00000568784 OR10AC1Q8NH08 325 aa13.27□□□□□ -0.28
VPS35-210ENST00000568784 HHIPL1Q96JK4 782 aa13.27□□□□□ -0.28
VPS35-210ENST00000568784 SAV1Q9H4B6 383 aaPredicted RBP13.27□□□□□ -0.28
VPS35-210ENST00000568784 C2orf42Q9NWW7 574 aa13.27□□□□□ -0.28
VPS35-210ENST00000568784 COMMD9Q9P000 198 aa13.27□□□□□ -0.28
VPS35-210ENST00000568784 HEBP2Q9Y5Z4 205 aa13.27□□□□□ -0.28
VPS35-210ENST00000568784 AIPO00170 330 aa13.27□□□□□ -0.29
VPS35-210ENST00000568784 PRICKLE3O43900 615 aaPredicted RBP13.27□□□□□ -0.29
VPS35-210ENST00000568784 ADAM11O75078 769 aa13.27□□□□□ -0.29
VPS35-210ENST00000568784 GALP22466 123 aa13.27□□□□□ -0.29
VPS35-210ENST00000568784 DLX5P56178 289 aa13.27□□□□□ -0.29
VPS35-210ENST00000568784 NANOS3P60323 173 aaKnown RBP13.27□□□□□ -0.29
VPS35-210ENST00000568784 ZNF776Q68DI1 518 aaPredicted RBP13.27□□□□□ -0.29
VPS35-210ENST00000568784 PRR22Q8IZ63 422 aa13.27□□□□□ -0.29
VPS35-210ENST00000568784 Q9N2J8 555 aa13.27□□□□□ -0.29
VPS35-210ENST00000568784 COL4A6Q14031 1691 aa13.27□□□□□ -0.29
VPS35-210ENST00000568784 CABIN1Q9Y6J0 2220 aa13.27□□□□□ -0.29
VPS35-210ENST00000568784 THSD7BQ9C0I4 1608 aa13.27□□□□□ -0.29
VPS35-210ENST00000568784 DCDC2BA2VCK2 349 aa13.27□□□□□ -0.29
VPS35-210ENST00000568784 M0QYG6 137 aa13.27□□□□□ -0.29
VPS35-210ENST00000568784 HRKO00198 91 aa13.27□□□□□ -0.29
VPS35-210ENST00000568784 PRKACAP17612 351 aa13.27□□□□□ -0.29
VPS35-210ENST00000568784 GPR18Q14330 331 aa13.27□□□□□ -0.29
VPS35-210ENST00000568784 ITPRIPL2Q3MIP1 535 aa13.27□□□□□ -0.29
VPS35-210ENST00000568784 TMUB2Q71RG4 321 aa13.27□□□□□ -0.29
VPS35-210ENST00000568784 GRHPRQ9UBQ7 328 aa13.27□□□□□ -0.29
VPS35-210ENST00000568784 RWDD3Q9Y3V2 267 aa13.27□□□□□ -0.29
VPS35-210ENST00000568784 TRAV1-2A0A0B4J238 106 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 PIN1P1O15428 100 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 LPLP06858 475 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 SEC61A1P61619 476 aaKnown RBP13.26□□□□□ -0.29
VPS35-210ENST00000568784 PPP2CBP62714 309 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 PPP2CAP67775 309 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 FAM53BQ14153 422 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 MFSD13AQ14CX5 517 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 ULK3Q6PHR2 472 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 GSG1LQ6UXU4 331 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 GLB1L2Q8IW92 636 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.26□□□□□ -0.29
VPS35-210ENST00000568784 CHD7Q9P2D1 2997 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 SPAG17Q6Q759 2223 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 CCSO14618 274 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 IFNGR1P15260 489 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 MAP3K8P41279 467 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 SKP1P63208 163 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 STAC2Q6ZMT1 411 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 PXKQ7Z7A4 578 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 PLPP7Q8NBV4 271 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 OR4D10Q8NGI6 311 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 ZNF764Q96H86 408 aaPredicted RBP13.26□□□□□ -0.29
VPS35-210ENST00000568784 SYNDIG1Q9H7V2 258 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 ERVK-19Q9WJR5 959 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 VAMP1P23763 118 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 ILF3Q12906 894 aaKnown RBP eCLIP13.26□□□□□ -0.29
VPS35-210ENST00000568784 PLA2G7Q13093 441 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 OVCH1Q7RTY7 1134 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 POMGNT2Q8NAT1 580 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 OR4C16Q8NGL9 310 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 SLC25A38Q96DW6 304 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 DUSP22Q9NRW4 184 aa13.26□□□□□ -0.29
VPS35-210ENST00000568784 PCDHGA9Q9Y5G4 932 aaKnown RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms