RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 PEX7O00628 323 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 XKRYO14609 159 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 PRRG1O14668 218 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 UGT1A9O60656 530 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 H2BFMP0C1H6 154 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 TLX1NBP0CAT3 122 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 PTMSP20962 102 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 IL10P22301 178 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 HMGB2P26583 209 aaKnown RBP1.37□□□□□ -2.19
VPS35-207ENST00000568191 KRTAP12-4P60329 112 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 CACNG7P62955 275 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 MEF2BQ02080 365 aaPredicted RBP1.37□□□□□ -2.19
VPS35-207ENST00000568191 PDIA2Q13087 525 aaKnown RBP1.37□□□□□ -2.19
VPS35-207ENST00000568191 SCGB2A2Q13296 93 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 VGLL4Q14135 290 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 IRF4Q15306 451 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 STK11Q15831 433 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 MARCH8Q5T0T0 291 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 OR52E8Q6IFG1 317 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 NCCRP1Q6ZVX7 275 aaPredicted RBP1.37□□□□□ -2.19
VPS35-207ENST00000568191 PGAP1Q75T13 922 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 BHLHA15Q7RTS1 189 aaPredicted RBP1.37□□□□□ -2.19
VPS35-207ENST00000568191 CLDN19Q8N6F1 224 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 OR4F15Q8NGB8 312 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 OR10A7Q8NGE5 316 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 OR52P1PQ8NH57 321 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 FAM110BQ8TC76 370 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 ITCHQ96J02 903 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 OXGR1Q96P68 337 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 RNF2Q99496 336 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 CDX2Q99626 313 aaPredicted RBP1.37□□□□□ -2.19
VPS35-207ENST00000568191 SRMSQ9H3Y6 488 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 RBKSQ9H477 322 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 RANBP3Q9H6Z4 567 aaPredicted RBP1.37□□□□□ -2.19
VPS35-207ENST00000568191 WFDC1Q9HC57 220 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 SEC14L3Q9UDX4 400 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 HOOK1Q9UJC3 728 aaKnown RBP1.37□□□□□ -2.19
VPS35-207ENST00000568191 WIF1Q9Y5W5 379 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 UBIAD1Q9Y5Z9 338 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 U3KQV3 271 aa1.37□□□□□ -2.19
VPS35-207ENST00000568191 IGLV3-22A0A075B6J6 115 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 A0A1W2PNV4 684 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 PRSS37A4D1T9 235 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 C17orf51A8MQB3 221 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 C12orf71A8MTZ7 269 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 C12orf77C9JDV5 145 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 H3BNH8 94 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 BTN3A3O00478 584 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 PFKFB2O60825 505 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 BCAS1O75363 584 aaPredicted RBP1.36□□□□□ -2.19
VPS35-207ENST00000568191 IGHG4P01861 327 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 ZDHHC11BP0C7U3 371 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 EPB41P11171 864 aaKnown RBP1.36□□□□□ -2.19
VPS35-207ENST00000568191 GCAP28676 217 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 LAP3P28838 519 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 CD34P28906 385 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 CASP4P49662 377 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 RGS4P49798 205 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 FGF8P55075 233 aaPredicted RBP1.36□□□□□ -2.19
VPS35-207ENST00000568191 PKNOX1P55347 436 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 BPIFB3P59826 476 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 IRX3P78415 501 aaPredicted RBP1.36□□□□□ -2.19
VPS35-207ENST00000568191 SPIBQ01892 262 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 PLD1Q13393 1074 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 SELPLGQ14242 412 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 CYTH1Q15438 398 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 GUCA2BQ16661 112 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 MOB3BQ86TA1 216 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 CNPY4Q8N129 248 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 OR5W2Q8NH69 310 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 CD300LFQ8TDQ1 290 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 CTNNBL1Q8WYA6 563 aaPredicted RBP1.36□□□□□ -2.19
VPS35-207ENST00000568191 RGP1Q92546 391 aaPredicted RBP1.36□□□□□ -2.19
VPS35-207ENST00000568191 DNAJC19Q96DA6 116 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 SH3YL1Q96HL8 342 aaPredicted RBP1.36□□□□□ -2.19
VPS35-207ENST00000568191 TMEM246Q9BRR3 403 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 NIPSNAP3BQ9BS92 247 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 CAPS2Q9BXY5 557 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 THUMPD1Q9NXG2 353 aaKnown RBP1.36□□□□□ -2.19
VPS35-207ENST00000568191 ZNF629Q9UEG4 869 aaPredicted RBP1.36□□□□□ -2.19
VPS35-207ENST00000568191 MMP17Q9ULZ9 603 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 F11RQ9Y624 299 aaKnown RBP1.36□□□□□ -2.19
VPS35-207ENST00000568191 IGSF9BQ9UPX0 1349 aa1.36□□□□□ -2.19
VPS35-207ENST00000568191 COL5A1P20908 1838 aaPredicted RBP1.36□□□□□ -2.19
VPS35-207ENST00000568191 DOCK8Q8NF50 2099 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 IGLV3-12A0A075B6K2 115 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 PLAC8L1A1L4L8 177 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 ZNF233A6NK53 670 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 RPL36A-HNRNPH2H7BZ11 118 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 K7EPI3 171 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 XPO1O14980 1071 aaKnown RBP1.35□□□□□ -2.19
VPS35-207ENST00000568191 MAPK13O15264 365 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 SMPD2O60906 423 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 COX5AP20674 150 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 ATP6V1C1P21283 382 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 HTR2AP28223 471 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 MDH1P40925 334 aaKnown RBP1.35□□□□□ -2.19
VPS35-207ENST00000568191 MAP3K8P41279 467 aa1.35□□□□□ -2.19
VPS35-207ENST00000568191 QARSP47897 775 aaKnown RBP1.35□□□□□ -2.19
VPS35-207ENST00000568191 GPM6AP51674 278 aa1.35□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms