RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 WDR76Q9H967 626 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 ADGRL4Q9HBW9 690 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 AKIP1Q9NQ31 210 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 TXNL4BQ9NX01 149 aaKnown RBP6.82□□□□□ -1.32
VPS39-204ENST00000561818 PAQR5Q9NXK6 330 aaPredicted RBP6.82□□□□□ -1.32
VPS39-204ENST00000561818 GALNT8Q9NY28 637 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 VSX1Q9NZR4 365 aaPredicted RBP6.82□□□□□ -1.32
VPS39-204ENST00000561818 TCFL5Q9UL49 500 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 RASD1Q9Y272 281 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 FARSAQ9Y285 508 aaKnown RBP6.82□□□□□ -1.32
VPS39-204ENST00000561818 NTNG1Q9Y2I2 539 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 B3GALT1Q9Y5Z6 326 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 TRAV1-2A0A0B4J238 106 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 TEX13CA0A0J9YWL9 993 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 PRSS37A4D1T9 235 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 CCDC182A6NF36 153 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 TMEM212A6NML5 194 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 PATE3B3GLJ2 98 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 NPIPA5E9PKD4 350 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 M0R129 80 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 WWP2O00308 870 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 CASKO14936 926 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 ADAM11O75078 769 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 KLF7O75840 302 aaPredicted RBP6.81□□□□□ -1.32
VPS39-204ENST00000561818 OR2J2O76002 312 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 NTN1O95631 604 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 PMS2P2O95744 297 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 PTTG1O95997 202 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 MT-CO3P00414 261 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 P04436 131 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 CD59P13987 128 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 CELP19835 753 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 SOX3P41225 446 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 CASP3P42574 277 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 GUCA1AP43080 201 aaPredicted RBP6.81□□□□□ -1.32
VPS39-204ENST00000561818 BMXP51813 675 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 RRADP55042 308 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 SLC35A1P78382 337 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 TLE3Q04726 772 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 PLPPR5Q32ZL2 321 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 SLC35F1Q5T1Q4 408 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 PDSS1Q5T2R2 415 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 EEF1A1P5Q5VTE0 462 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 FAM69BQ5VUD6 431 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 SLC18B1Q6NT16 456 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 APOOLQ6UXV4 268 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 ASB18Q6ZVZ8 466 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 VASH1Q7L8A9 365 aaPredicted RBP6.81□□□□□ -1.32
VPS39-204ENST00000561818 ZBTB46Q86UZ6 589 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 TMPRSS12Q86WS5 348 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 RPS19BP1Q86WX3 136 aaKnown RBP6.81□□□□□ -1.32
VPS39-204ENST00000561818 ADGRG3Q86Y34 549 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 PRR22Q8IZ63 422 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 GTPBP8Q8N3Z3 284 aaPredicted RBP6.81□□□□□ -1.32
VPS39-204ENST00000561818 ZNF321PQ8N8H1 164 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 FADS6Q8N9I5 356 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 LRRC75AQ8NAA5 344 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 SDR9C7Q8NEX9 313 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 OR11G2Q8NGC1 345 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 OR6K6Q8NGW6 343 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 OR4K13Q8NH42 304 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 DOK4Q8TEW6 326 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 SPRYD4Q8WW59 207 aaPredicted RBP6.81□□□□□ -1.32
VPS39-204ENST00000561818 GATAD2BQ8WXI9 593 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 PTP4A1Q93096 173 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 ITFG2Q969R8 447 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 INTS12Q96CB8 462 aaKnown RBP6.81□□□□□ -1.32
VPS39-204ENST00000561818 INTS14Q96SY0 518 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 WACQ9BTA9 647 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 ANGPTL4Q9BY76 406 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.81□□□□□ -1.32
VPS39-204ENST00000561818 OR51E2Q9H255 320 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 NIPAL2Q9H841 368 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 MOB1AQ9H8S9 216 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 SP140LQ9H930 580 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 MARCH7Q9H992 704 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 LIN28AQ9H9Z2 209 aaKnown RBP6.81□□□□□ -1.32
VPS39-204ENST00000561818 APMAPQ9HDC9 416 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 CHST11Q9NPF2 352 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 TIGARQ9NQ88 270 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 KLHL9Q9P2J3 617 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 AASSQ9UDR5 926 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 LAMP5Q9UJQ1 280 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 BOKQ9UMX3 212 aaPredicted RBP6.81□□□□□ -1.32
VPS39-204ENST00000561818 NPIPA1Q9UND3 350 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 HS3ST3B1Q9Y662 390 aa6.81□□□□□ -1.32
VPS39-204ENST00000561818 ASCC3Q8N3C0 2202 aaKnown RBP6.81□□□□□ -1.32
VPS39-204ENST00000561818 ASXL3Q9C0F0 2248 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 CDC14CA4D256 554 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 OR2W5A6NFC9 320 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 OR6C65A6NJZ3 312 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 FAM183AA6NL82 134 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 PLPP3O14495 311 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 OGG1O15527 345 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 LRRTM2O43300 516 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 AQP8O94778 261 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 IGHG1P01857 330 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 APOC1P02654 83 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 UMODP07911 640 aa6.8□□□□□ -1.32
VPS39-204ENST00000561818 MYF5P13349 255 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms