RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 TBPL2Q6SJ96 375 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 OAFQ86UD1 273 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 ZNF100Q8IYN0 542 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 OR10G2Q8NGC3 310 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 LILRB4Q8NHJ6 448 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 SLCO4A1Q96BD0 722 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 FUZQ9BT04 418 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 KLF2Q9Y5W3 355 aaPredicted RBP8.96□□□□□ -0.98
USP3-216ENST00000559873 U3KQV3 271 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 INTS1Q8N201 2190 aaKnown RBP8.96□□□□□ -0.98
USP3-216ENST00000559873 MED12LQ86YW9 2145 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 UNC119BA6NIH7 251 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 NPIPB13A6NJU9 1138 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 NPIPB4C9JG80 1138 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 C11orf98E9PRG8 122 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 RAMP1O60894 148 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 SLC43A1O75387 559 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 TIPRLO75663 272 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 SERPINI2O75830 405 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 NDUFB2O95178 105 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 ADAP00813 363 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 KLK2P20151 261 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 MAKP20794 623 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 UQCRC1P31930 480 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 OMPP47874 163 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 OR3A2P47893 321 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 RPS4XP62701 263 aaKnown RBP8.95□□□□□ -0.98
USP3-216ENST00000559873 TSPAN31Q12999 210 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 MICAQ29983 383 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 FBXL19-AS1Q494R0 122 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 ZBED5Q49AG3 693 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 FAM205BPQ63HN1 556 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 C1orf94Q6P1W5 598 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 BEND4Q6ZU67 534 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 CREB3L2Q70SY1 520 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 AAED1Q7RTV5 226 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 ABHD12BQ7Z5M8 362 aaPredicted RBP8.95□□□□□ -0.98
USP3-216ENST00000559873 LRRC17Q8N6Y2 441 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 POMGNT2Q8NAT1 580 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 AQP11Q8NBQ7 271 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 RELL2Q8NC24 303 aaPredicted RBP8.95□□□□□ -0.98
USP3-216ENST00000559873 OR52L1Q8NGH7 329 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 OR4C15Q8NGM1 316 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 FANK1Q8TC84 345 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 GNPDA2Q8TDQ7 276 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 GIPC3Q8TF64 312 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 PYDC1Q8WXC3 89 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 DNAJC9Q8WXX5 260 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 STARD4Q96DR4 205 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 NRBF2Q96F24 287 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 ADAD1Q96M93 576 aaKnown RBP8.95□□□□□ -0.98
USP3-216ENST00000559873 DENND2DQ9H6A0 471 aaPredicted RBP8.95□□□□□ -0.98
USP3-216ENST00000559873 C12orf49Q9H741 205 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 ZNF556Q9HAH1 456 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 B3GAT2Q9NPZ5 323 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 INIPQ9NRY2 104 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 ELOVL5Q9NYP7 299 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 KIF17Q9P2E2 1029 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 B3GAT1Q9P2W7 334 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 SEC14L4Q9UDX3 406 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 ENOPH1Q9UHY7 261 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 ING1Q9UK53 422 aaPredicted RBP8.95□□□□□ -0.98
USP3-216ENST00000559873 MGAT4BQ9UQ53 548 aa8.95□□□□□ -0.98
USP3-216ENST00000559873 ANKHD1Q8IWZ3 2542 aaKnown RBP8.95□□□□□ -0.98
USP3-216ENST00000559873 GCN1Q92616 2671 aaKnown RBP8.95□□□□□ -0.98
USP3-216ENST00000559873 TRAV27A0A087WT01 109 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 ZNF726A6NNF4 738 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 TRAF3IP2O43734 574 aaPredicted RBP8.94□□□□□ -0.98
USP3-216ENST00000559873 KRT33AO76009 404 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 BCL10O95999 233 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 ANXA8P13928 327 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 ZNF23P17027 643 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 RPL4P36578 427 aaKnown RBP8.94□□□□□ -0.98
USP3-216ENST00000559873 AQP2P41181 271 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 PCYT1AP49585 367 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 CLDN17P56750 224 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 LSM11P83369 360 aaKnown RBP eCLIP8.94□□□□□ -0.98
USP3-216ENST00000559873 PGBD2Q6P3X8 592 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 NIPAL3Q6P499 406 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 SHQ1Q6PI26 577 aaKnown RBP8.94□□□□□ -0.98
USP3-216ENST00000559873 TFAP2EQ6VUC0 442 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 SLC35D2Q76EJ3 337 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 ZNF771Q7L3S4 317 aaPredicted RBP8.94□□□□□ -0.98
USP3-216ENST00000559873 BTLAQ7Z6A9 289 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 LUZP2Q86TE4 346 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 KIF18BQ86Y91 864 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 HIPK1Q86Z02 1210 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 ZDHHC13Q8IUH4 622 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 EPHX4Q8IUS5 362 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 UBE2J2Q8N2K1 259 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 KDM8Q8N371 416 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 SVOPLQ8N434 492 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 OR9Q2Q8NGE9 314 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 OR13C2Q8NGS9 318 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 OR51A7Q8NH64 312 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 RNASE6Q93091 150 aaKnown RBP8.94□□□□□ -0.98
USP3-216ENST00000559873 CENPNQ96H22 339 aaPredicted RBP8.94□□□□□ -0.98
USP3-216ENST00000559873 RBM24Q9BX46 236 aaKnown RBP8.94□□□□□ -0.98
USP3-216ENST00000559873 OSBPL10Q9BXB5 764 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 DGCR6LQ9BY27 220 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms