RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 LIPNQ5VXI9 398 aa11.32□□□□□ -0.6
TPM1-220ENST00000559556 ATG16L1Q676U5 607 aa11.32□□□□□ -0.6
TPM1-220ENST00000559556 C5orf46Q6UWT4 87 aa11.32□□□□□ -0.6
TPM1-220ENST00000559556 MDP1Q86V88 176 aa11.32□□□□□ -0.6
TPM1-220ENST00000559556 CCDC36Q8IYA8 594 aa11.32□□□□□ -0.6
TPM1-220ENST00000559556 TMEM123Q8N131 208 aa11.32□□□□□ -0.6
TPM1-220ENST00000559556 ZCCHC24Q8N2G6 241 aaKnown RBP11.32□□□□□ -0.6
TPM1-220ENST00000559556 GPR137CQ8N3F9 429 aa11.32□□□□□ -0.6
TPM1-220ENST00000559556 SLC25A36Q96CQ1 311 aa11.32□□□□□ -0.6
TPM1-220ENST00000559556 ZNF837Q96EG3 531 aaPredicted RBP11.32□□□□□ -0.6
TPM1-220ENST00000559556 KTI12Q96EK9 354 aaPredicted RBP11.32□□□□□ -0.6
TPM1-220ENST00000559556 C1orf159Q96HA4 380 aa11.32□□□□□ -0.6
TPM1-220ENST00000559556 MAELQ96JY0 434 aaKnown RBP11.32□□□□□ -0.6
TPM1-220ENST00000559556 CACYBPQ9HB71 228 aaKnown RBP11.32□□□□□ -0.6
TPM1-220ENST00000559556 ZIM2Q9NZV7 527 aa11.32□□□□□ -0.6
TPM1-220ENST00000559556 USP22Q9UPT9 525 aa11.32□□□□□ -0.6
TPM1-220ENST00000559556 PCDHB14Q9Y5E9 798 aa11.32□□□□□ -0.6
TPM1-220ENST00000559556 LOC102725191A0A1B0GVB3 256 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 TMEM247A6NEH6 219 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 VSTM5A8MXK1 200 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 ZNF99A8MXY4 864 aaPredicted RBP11.31□□□□□ -0.6
TPM1-220ENST00000559556 M0R082 166 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 AIM2O14862 343 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 TCF21O43680 179 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 AKAP8O43823 692 aaKnown RBP11.31□□□□□ -0.6
TPM1-220ENST00000559556 OR2T1O43869 369 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 SLC22A3O75751 556 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 BMP2P12643 396 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 APEX1P27695 318 aaKnown RBP11.31□□□□□ -0.6
TPM1-220ENST00000559556 CDH15P55291 814 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 SNTB2Q13425 540 aaKnown RBP11.31□□□□□ -0.6
TPM1-220ENST00000559556 ADRM1Q16186 407 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 GTDC1Q4AE62 458 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 ZNF311Q5JNZ3 666 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 UGT2A3Q6UWM9 527 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 SPATA21Q7Z572 469 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 CDK20Q8IZL9 346 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 LINC01356Q8N9X3 169 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 ADPRHL1Q8NDY3 354 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 PIK3C3Q8NEB9 887 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 IL17RDQ8NFM7 739 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 ZNF417Q8TAU3 575 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 CKAP2Q8WWK9 683 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 ITCHQ96J02 903 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 OR2M2Q96R28 347 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 SNX18Q96RF0 628 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 ZNF587Q96SQ5 575 aaPredicted RBP11.31□□□□□ -0.6
TPM1-220ENST00000559556 RMND5AQ9H871 391 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 NOX3Q9HBY0 568 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 CRLF2Q9HC73 371 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 BCL2L10Q9HD36 194 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 DYNLRB1Q9NP97 96 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 KCNK9Q9NPC2 374 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 A4GALTQ9NPC4 353 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 SDR39U1Q9NRG7 319 aaPredicted RBP11.31□□□□□ -0.6
TPM1-220ENST00000559556 THAP1Q9NVV9 213 aa11.31□□□□□ -0.6
TPM1-220ENST00000559556 TMEFF2Q9UIK5 374 aaPredicted RBP11.31□□□□□ -0.6
TPM1-220ENST00000559556 CMYA5Q8N3K9 4069 aa11.3□□□□□ -0.6
TPM1-220ENST00000559556 HOXB9P17482 250 aaPredicted RBP11.3□□□□□ -0.6
TPM1-220ENST00000559556 WDR4P57081 412 aaKnown RBP11.3□□□□□ -0.6
TPM1-220ENST00000559556 HOXC5Q00444 222 aa11.3□□□□□ -0.6
TPM1-220ENST00000559556 NPRL3Q12980 569 aa11.3□□□□□ -0.6
TPM1-220ENST00000559556 FADDQ13158 208 aa11.3□□□□□ -0.6
TPM1-220ENST00000559556 DAG1Q14118 895 aa11.3□□□□□ -0.6
TPM1-220ENST00000559556 RGNQ15493 299 aa11.3□□□□□ -0.6
TPM1-220ENST00000559556 HHATQ5VTY9 493 aa11.3□□□□□ -0.6
TPM1-220ENST00000559556 MEX3DQ86XN8 651 aaKnown RBP11.3□□□□□ -0.6
TPM1-220ENST00000559556 LSMEM1Q8N8F7 131 aa11.3□□□□□ -0.6
TPM1-220ENST00000559556 BBS10Q8TAM1 723 aa11.3□□□□□ -0.6
TPM1-220ENST00000559556 UBASH3BQ8TF42 649 aa11.3□□□□□ -0.6
TPM1-220ENST00000559556 SLC38A4Q969I6 547 aa11.3□□□□□ -0.6
TPM1-220ENST00000559556 TAAR8Q969N4 342 aa11.3□□□□□ -0.6
TPM1-220ENST00000559556 PAIP2Q9BPZ3 127 aaKnown RBP11.3□□□□□ -0.6
TPM1-220ENST00000559556 RSPO3Q9BXY4 272 aaPredicted RBP11.3□□□□□ -0.6
TPM1-220ENST00000559556 B3GNT2Q9NY97 397 aa11.3□□□□□ -0.6
TPM1-220ENST00000559556 CMAHPQ9Y471 501 aa11.3□□□□□ -0.6
TPM1-220ENST00000559556 IGKV1D-42A0A075B6H8 117 aa11.29□□□□□ -0.6
TPM1-220ENST00000559556 A0A1B0GWA3 101 aa11.29□□□□□ -0.6
TPM1-220ENST00000559556 SLCO1B7G3V0H7 640 aa11.29□□□□□ -0.6
TPM1-220ENST00000559556 SYNGR3O43761 229 aa11.29□□□□□ -0.6
TPM1-220ENST00000559556 SEC14L2O76054 403 aa11.29□□□□□ -0.6
TPM1-220ENST00000559556 NUDT7P0C024 238 aa11.29□□□□□ -0.6
TPM1-220ENST00000559556 ETS2P15036 469 aa11.29□□□□□ -0.6
TPM1-220ENST00000559556 IFNGR1P15260 489 aa11.29□□□□□ -0.6
TPM1-220ENST00000559556 ITGA2P17301 1181 aa11.29□□□□□ -0.6
TPM1-220ENST00000559556 NR4A1P22736 598 aa11.29□□□□□ -0.6
TPM1-220ENST00000559556 HTR2AP28223 471 aa11.29□□□□□ -0.6
TPM1-220ENST00000559556 GRPRP30550 384 aa11.29□□□□□ -0.6
TPM1-220ENST00000559556 EVX1P49640 407 aa11.29□□□□□ -0.6
TPM1-220ENST00000559556 POLR2JP52435 117 aaKnown RBP11.29□□□□□ -0.6
TPM1-220ENST00000559556 DVL1P1P54792 670 aaPredicted RBP11.29□□□□□ -0.6
TPM1-220ENST00000559556 C1DQ13901 141 aaKnown RBP11.29□□□□□ -0.6
TPM1-220ENST00000559556 TRIP10Q15642 601 aa11.29□□□□□ -0.6
TPM1-220ENST00000559556 SLC9B1Q4ZJI4 515 aa11.29□□□□□ -0.6
TPM1-220ENST00000559556 PHYHD1Q5SRE7 291 aa11.29□□□□□ -0.6
TPM1-220ENST00000559556 C6orf10Q5SRN2 563 aa11.29□□□□□ -0.6
TPM1-220ENST00000559556 CEP85LQ5SZL2 805 aa11.29□□□□□ -0.6
TPM1-220ENST00000559556 NXNQ6DKJ4 435 aa11.29□□□□□ -0.6
TPM1-220ENST00000559556 KRT80Q6KB66 452 aa11.29□□□□□ -0.6
TPM1-220ENST00000559556 H1FNTQ75WM6 255 aaPredicted RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms