RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 DLL4Q9NR61 685 aa11.74□□□□□ -0.53
LDLR-207ENST00000558013 TRAV8-7A0A075B6U6 113 aa11.74□□□□□ -0.53
LDLR-207ENST00000558013 CTNSO60931 367 aa11.74□□□□□ -0.53
LDLR-207ENST00000558013 SCO1O75880 301 aa11.74□□□□□ -0.53
LDLR-207ENST00000558013 MAS1P04201 325 aa11.74□□□□□ -0.53
LDLR-207ENST00000558013 RAD52P43351 418 aa11.74□□□□□ -0.53
LDLR-207ENST00000558013 PTH2RP49190 550 aa11.74□□□□□ -0.53
LDLR-207ENST00000558013 GPR143P51810 404 aa11.74□□□□□ -0.53
LDLR-207ENST00000558013 CTXN1P60606 82 aa11.74□□□□□ -0.53
LDLR-207ENST00000558013 ARMC6Q6NXE6 501 aa11.74□□□□□ -0.53
LDLR-207ENST00000558013 LRRC69Q6ZNQ3 347 aa11.74□□□□□ -0.53
LDLR-207ENST00000558013 OVCH1Q7RTY7 1134 aa11.74□□□□□ -0.53
LDLR-207ENST00000558013 OR2T35Q8NGX2 323 aa11.74□□□□□ -0.53
LDLR-207ENST00000558013 SYNPRQ8TBG9 265 aa11.74□□□□□ -0.53
LDLR-207ENST00000558013 ZDHHC1Q8WTX9 485 aa11.74□□□□□ -0.53
LDLR-207ENST00000558013 ATOH1Q92858 354 aaPredicted RBP11.74□□□□□ -0.53
LDLR-207ENST00000558013 MAP6Q96JE9 813 aa11.74□□□□□ -0.53
LDLR-207ENST00000558013 OR2M2Q96R28 347 aa11.74□□□□□ -0.53
LDLR-207ENST00000558013 AMELYQ99218 206 aa11.74□□□□□ -0.53
LDLR-207ENST00000558013 SPRTNQ9H040 489 aaPredicted RBP11.74□□□□□ -0.53
LDLR-207ENST00000558013 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.74□□□□□ -0.531e-12■□□□□ 9.5
LDLR-207ENST00000558013 EIF3KQ9UBQ5 218 aaKnown RBP11.74□□□□□ -0.53
LDLR-207ENST00000558013 ZNF281Q9Y2X9 895 aa11.74□□□□□ -0.53
LDLR-207ENST00000558013 ZNF337Q9Y3M9 751 aa11.74□□□□□ -0.53
LDLR-207ENST00000558013 CNTRLQ7Z7A1 2325 aa11.74□□□□□ -0.53
LDLR-207ENST00000558013 ELOA3DA6NLF2 546 aaPredicted RBP11.73□□□□□ -0.53
LDLR-207ENST00000558013 FOXL2P58012 376 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 RPS4XP62701 263 aaKnown RBP11.73□□□□□ -0.53
LDLR-207ENST00000558013 PITPNAQ00169 270 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 ELOA3BQ3SY89 546 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 UBE2NLQ5JXB2 153 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 CD276Q5ZPR3 534 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 ZNF767PQ75MW2 155 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 BTN2A1Q7KYR7 527 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 ZNF615Q8N8J6 731 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 ELOA3Q8NG57 546 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 PPP1R14AQ96A00 147 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 TOE1Q96GM8 510 aaKnown RBP11.73□□□□□ -0.53
LDLR-207ENST00000558013 EMC7Q9NPA0 242 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 NANSQ9NR45 359 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 RXFP3Q9NSD7 469 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 SCML1Q9UN30 329 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 PCNX3Q9H6A9 2034 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 SPTY2D1-AS1A0A0U1RR47 76 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 ARPC1BO15143 372 aaKnown RBP11.73□□□□□ -0.53
LDLR-207ENST00000558013 CLPSP04118 112 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 HRGP04196 525 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 FBXO45P0C2W1 286 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 SULT1A3P0DMM9 295 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 SULT1A4P0DMN0 295 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 ANXA7P20073 488 aaKnown RBP11.73□□□□□ -0.53
LDLR-207ENST00000558013 CDK2P24941 298 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 GFERP55789 205 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 TOMM34Q15785 309 aaPredicted RBP11.73□□□□□ -0.53
LDLR-207ENST00000558013 CLPPQ16740 277 aaPredicted RBP11.73□□□□□ -0.53
LDLR-207ENST00000558013 PRTGQ2VWP7 1150 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 MANEAQ5SRI9 462 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 ZNF684Q5T5D7 378 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 DPY19L4Q7Z388 723 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 OR6V1Q8N148 313 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 FAM109AQ8N4B1 249 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.73□□□□□ -0.53
LDLR-207ENST00000558013 ADAD1Q96M93 576 aaKnown RBP11.73□□□□□ -0.53
LDLR-207ENST00000558013 LPAR4Q99677 370 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 SYNDIG1Q9H7V2 258 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 CA10Q9NS85 328 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 CD207Q9UJ71 328 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 ELF5Q9UKW6 265 aaPredicted RBP11.73□□□□□ -0.53
LDLR-207ENST00000558013 AIPO00170 330 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 PRAMEF2O60811 474 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 UPK3AO75631 287 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 GATBO75879 557 aaKnown RBP11.73□□□□□ -0.53
LDLR-207ENST00000558013 SLC22A5O76082 557 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 GLCEO94923 617 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 DNASE1P24855 282 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 YPEL5P62699 121 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 LGALS3BPQ08380 585 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 HTR4Q13639 388 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 KLHL26Q53HC5 615 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 SLC25A25Q6KCM7 469 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 PWWP2BQ6NUJ5 590 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 STAC2Q6ZMT1 411 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 NLRC3Q7RTR2 1065 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 FAM122BQ7Z309 247 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 C1orf216Q8TAB5 229 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 NXF5Q9H1B4 397 aaKnown RBP11.73□□□□□ -0.53
LDLR-207ENST00000558013 PNO1Q9NRX1 252 aaKnown RBP11.73□□□□□ -0.53
LDLR-207ENST00000558013 IKZF2Q9UKS7 526 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 V9GY05 133 aa11.73□□□□□ -0.53
LDLR-207ENST00000558013 ARPC3O15145 178 aa11.72□□□□□ -0.53
LDLR-207ENST00000558013 AKR7A3O95154 331 aa11.72□□□□□ -0.53
LDLR-207ENST00000558013 LBX1P52954 281 aa11.72□□□□□ -0.53
LDLR-207ENST00000558013 RPL6Q02878 288 aaKnown RBP11.72□□□□□ -0.53
LDLR-207ENST00000558013 GRM7Q14831 915 aa11.72□□□□□ -0.53
LDLR-207ENST00000558013 ZNF74Q16587 644 aa11.72□□□□□ -0.53
LDLR-207ENST00000558013 ALG10Q5BKT4 473 aa11.72□□□□□ -0.53
LDLR-207ENST00000558013 PMM1Q92871 262 aa11.72□□□□□ -0.53
LDLR-207ENST00000558013 ADOQ96SZ5 270 aa11.72□□□□□ -0.53
LDLR-207ENST00000558013 PCDHGA5Q9Y5G8 931 aa11.72□□□□□ -0.53
LDLR-207ENST00000558013 CABIN1Q9Y6J0 2220 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms