RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 RNF148Q8N7C7 305 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 ANKS4BQ8N8V4 417 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 OR5J2Q8NH18 312 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 PFN4Q8NHR9 129 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 TMEM255BQ8WV15 326 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 LZICQ8WZA0 190 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 FAM162AQ96A26 154 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 MBD6Q96DN6 1003 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 HSH2DQ96JZ2 352 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 PRRC1Q96M27 445 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 MUS81Q96NY9 551 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 OR2M2Q96R28 347 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 ESRP2Q9H6T0 727 aaKnown RBP12.05□□□□□ -0.48
SHMT2-219ENST00000555563 MEPEQ9NQ76 525 aaPredicted RBP12.05□□□□□ -0.48
SHMT2-219ENST00000555563 RIMS3Q9UJD0 308 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 RNF115Q9Y4L5 304 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 SLC25A15Q9Y619 301 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 CCDC168Q8NDH2 2452 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 DPRXA6NFQ7 191 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 OR6C65A6NJZ3 312 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 C11orf98E9PRG8 122 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 CLOCKO15516 846 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 AKAP8O43823 692 aaKnown RBP12.04□□□□□ -0.48
SHMT2-219ENST00000555563 SERPINI2O75830 405 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 FAM107AO95990 144 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 IFNW1P05000 195 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 CD3EP07766 207 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 CDH2P19022 906 aaPredicted RBP12.04□□□□□ -0.48
SHMT2-219ENST00000555563 RBM34P42696 430 aaKnown RBP12.04□□□□□ -0.48
SHMT2-219ENST00000555563 ROR2Q01974 943 aaKnown RBP12.04□□□□□ -0.48
SHMT2-219ENST00000555563 TGFBR3Q03167 851 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 FOXD4Q12950 439 aaPredicted RBP12.04□□□□□ -0.48
SHMT2-219ENST00000555563 DEFB113Q30KQ7 82 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 IFI44LQ53G44 452 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 GKAP1Q5VSY0 366 aaPredicted RBP12.04□□□□□ -0.48
SHMT2-219ENST00000555563 ADAM5Q6NVV9 412 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 C20orf204Q6ZNR8 217 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 CBLL1Q75N03 491 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 SSX8Q7RTT4 187 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 SLC46A3Q7Z3Q1 461 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 PGAM4Q8N0Y7 254 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 LRRC17Q8N6Y2 441 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 WDR31Q8NA23 367 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 FAM156AQ8NDB6 213 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 RBM15BQ8NDT2 890 aaKnown RBP12.04□□□□□ -0.48
SHMT2-219ENST00000555563 GEMIN6Q8WXD5 167 aaKnown RBP12.04□□□□□ -0.48
SHMT2-219ENST00000555563 ALPK1Q96QP1 1244 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 LINC00470Q9BZP3 86 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 CXXC4Q9H2H0 198 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 NANSQ9NR45 359 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 SLC17A5Q9NRA2 495 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 MED29Q9NX70 200 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 EGFL7Q9UHF1 273 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 ZNF229Q9UJW7 825 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 A4GNTQ9UNA3 340 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 NOX1Q9Y5S8 564 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 SNX13Q9Y5W8 968 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 C2CD3Q4AC94 2353 aa12.04□□□□□ -0.48
SHMT2-219ENST00000555563 HS3ST1O14792 307 aa12.03□□□□□ -0.48
SHMT2-219ENST00000555563 SLC43A1O75387 559 aa12.03□□□□□ -0.48
SHMT2-219ENST00000555563 MT-ND1P03886 318 aa12.03□□□□□ -0.48
SHMT2-219ENST00000555563 ADORA3P0DMS8 318 aa12.03□□□□□ -0.48
SHMT2-219ENST00000555563 THRBP10828 461 aa12.03□□□□□ -0.48
SHMT2-219ENST00000555563 UMPSP11172 480 aa12.03□□□□□ -0.48
SHMT2-219ENST00000555563 FUT4P22083 530 aa12.03□□□□□ -0.48
SHMT2-219ENST00000555563 AHCYP23526 432 aa12.03□□□□□ -0.48
SHMT2-219ENST00000555563 HOXC12P31275 282 aa12.03□□□□□ -0.48
SHMT2-219ENST00000555563 YAP1P46937 504 aaKnown RBP12.03□□□□□ -0.48
SHMT2-219ENST00000555563 ZNF83P51522 516 aa12.03□□□□□ -0.48
SHMT2-219ENST00000555563 SPOCK1Q08629 439 aa12.03□□□□□ -0.48
SHMT2-219ENST00000555563 HIKESHIQ53FT3 197 aa12.03□□□□□ -0.48
SHMT2-219ENST00000555563 CARD17Q5XLA6 110 aa12.03□□□□□ -0.48
SHMT2-219ENST00000555563 HMBOX1Q6NT76 420 aa12.03□□□□□ -0.48
SHMT2-219ENST00000555563 NHLRC1Q6VVB1 395 aa12.03□□□□□ -0.48
SHMT2-219ENST00000555563 SPNS3Q6ZMD2 512 aa12.03□□□□□ -0.48
SHMT2-219ENST00000555563 WDFY1Q8IWB7 410 aa12.03□□□□□ -0.48
SHMT2-219ENST00000555563 KBTBD8Q8NFY9 601 aa12.03□□□□□ -0.48
SHMT2-219ENST00000555563 OR1K1Q8NGR3 316 aa12.03□□□□□ -0.48
SHMT2-219ENST00000555563 TMEM239Q8WW34 195 aa12.03□□□□□ -0.48
SHMT2-219ENST00000555563 AKAP1Q92667 903 aaKnown RBP eCLIP12.03□□□□□ -0.48
SHMT2-219ENST00000555563 NEUROG1Q92886 237 aa12.03□□□□□ -0.48
SHMT2-219ENST00000555563 TXNDC15Q96J42 360 aa12.03□□□□□ -0.48
SHMT2-219ENST00000555563 CCL19Q99731 98 aa12.03□□□□□ -0.48
SHMT2-219ENST00000555563 EMC6Q9BV81 110 aa12.03□□□□□ -0.48
SHMT2-219ENST00000555563 C20orf141Q9NUB4 165 aa12.03□□□□□ -0.48
SHMT2-219ENST00000555563 FAM53CQ9NYF3 392 aa12.03□□□□□ -0.48
SHMT2-219ENST00000555563 F8P00451 2351 aa12.03□□□□□ -0.48
SHMT2-219ENST00000555563 ZFHX3Q15911 3703 aa12.02□□□□□ -0.49
SHMT2-219ENST00000555563 J3KTA2 159 aa12.02□□□□□ -0.49
SHMT2-219ENST00000555563 PIP5K1CO60331 668 aa12.02□□□□□ -0.49
SHMT2-219ENST00000555563 OR7A10O76100 309 aa12.02□□□□□ -0.49
SHMT2-219ENST00000555563 ASAH2BP0C7U1 165 aa12.02□□□□□ -0.49
SHMT2-219ENST00000555563 TCN1P20061 433 aaPredicted RBP12.02□□□□□ -0.49
SHMT2-219ENST00000555563 ST3GAL3Q11203 375 aa12.02□□□□□ -0.49
SHMT2-219ENST00000555563 TBRG1Q3YBR2 411 aa12.02□□□□□ -0.49
SHMT2-219ENST00000555563 KLHL24Q6TFL4 600 aa12.02□□□□□ -0.49
SHMT2-219ENST00000555563 FKBP9P1Q75LS8 142 aa12.02□□□□□ -0.49
SHMT2-219ENST00000555563 NANOGNBQ7Z5D8 188 aa12.02□□□□□ -0.49
SHMT2-219ENST00000555563 PXKQ7Z7A4 578 aa12.02□□□□□ -0.49
SHMT2-219ENST00000555563 C20orf196Q8IYI0 205 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms