RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 SIX6O95475 246 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 ETHE1O95571 254 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 GIPP09681 153 aaPredicted RBP7.01□□□□□ -1.29
LIMA1-216ENST00000552909 GABRA1P14867 456 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 CELP19835 753 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 MTNR1BP49286 362 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 MVDP53602 400 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 GAS1P54826 345 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 UCNP55089 124 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 RPS18P62269 152 aaKnown RBP7.01□□□□□ -1.29
LIMA1-216ENST00000552909 SNRPNP63162 240 aaKnown RBP7.01□□□□□ -1.29
LIMA1-216ENST00000552909 INSL4Q14641 139 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 SEC23BQ15437 767 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 RNASE12Q5GAN4 147 aaKnown RBP7.01□□□□□ -1.29
LIMA1-216ENST00000552909 C1orf189Q5VU69 101 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 SLC22A10Q63ZE4 541 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 PCSK4Q6UW60 755 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 SAMD14Q8IZD0 417 aaPredicted RBP7.01□□□□□ -1.29
LIMA1-216ENST00000552909 OR4K1Q8NGD4 311 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 NANPQ8TBE9 248 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 TEX47Q8TBZ9 253 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 CT55Q8WUE5 264 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 UBE2E3Q969T4 207 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 TMEM38AQ9H6F2 299 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 PELI2Q9HAT8 420 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 MRPS18AQ9NVS2 196 aaKnown RBP7.01□□□□□ -1.29
LIMA1-216ENST00000552909 ASB6Q9NWX5 421 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 NKIRAS2Q9NYR9 191 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 MED11Q9P086 117 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 MGAT4CQ9UBM8 478 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 GPN3Q9UHW5 284 aaPredicted RBP7.01□□□□□ -1.29
LIMA1-216ENST00000552909 ANGPT4Q9Y264 503 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 RUVBL1Q9Y265 456 aaKnown RBP7.01□□□□□ -1.29
LIMA1-216ENST00000552909 CHST2Q9Y4C5 530 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 SCN3AQ9NY46 2000 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 A0A0G2JPF8 293 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 HNRNPCL3B7ZW38 293 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 FOXE1O00358 373 aaPredicted RBP7.01□□□□□ -1.29
LIMA1-216ENST00000552909 FFAR1O14842 300 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 PRODHO43272 600 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 OR1F1O43749 312 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 SUSD5O60279 629 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 LCMT2O60294 686 aaKnown RBP7.01□□□□□ -1.29
LIMA1-216ENST00000552909 HPP00738 406 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 STATHP02808 62 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 MT-ND4P03905 459 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 RLN2P04090 185 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 FURINP09958 794 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 LIMS3P0CW19 117 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 LIMS4P0CW20 117 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 HNRNPCL4P0DMR1 293 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 DRD5P21918 477 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 ELAVL4P26378 380 aaKnown RBP7.01□□□□□ -1.29
LIMA1-216ENST00000552909 CMPK1P30085 196 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 CD79BP40259 229 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 ASMTP46597 345 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 MTNR1AP48039 350 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 RAP2BP61225 183 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 CSNK1G2P78368 415 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 PITPNAQ00169 270 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 LRRC74AQ0VAA2 488 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 SNTB2Q13425 540 aaKnown RBP7.01□□□□□ -1.29
LIMA1-216ENST00000552909 SLC9A5Q14940 896 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 ZNF630Q2M218 657 aaPredicted RBP7.01□□□□□ -1.29
LIMA1-216ENST00000552909 METTL11BQ5VVY1 283 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 ZNF385CQ66K41 422 aaPredicted RBP7.01□□□□□ -1.29
LIMA1-216ENST00000552909 ZNF425Q6IV72 752 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 PGBD2Q6P3X8 592 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 TRIM40Q6P9F5 258 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 HAGHLQ6PII5 290 aaPredicted RBP7.01□□□□□ -1.29
LIMA1-216ENST00000552909 IKBIPQ70UQ0 350 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 TMUB2Q71RG4 321 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 TMEM17Q86X19 198 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 SLC30A8Q8IWU4 369 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 OR52N2Q8NGI0 321 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 OR6S1Q8NH40 331 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 MR1Q95460 341 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 LCORQ96JN0 433 aaPredicted RBP7.01□□□□□ -1.29
LIMA1-216ENST00000552909 PDCD10Q9BUL8 212 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 SEMA4CQ9C0C4 833 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 BRF2Q9HAW0 419 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 EQTNQ9NQ60 294 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 GPATCH2Q9NW75 528 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 SEC14L3Q9UDX4 400 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 A0A0B4J203 849 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 SIGLEC5O15389 551 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 ARPC5O15511 151 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 GATCO43716 136 aaKnown RBP7□□□□□ -1.29
LIMA1-216ENST00000552909 FZD7O75084 574 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 RGS9O75916 674 aaPredicted RBP7□□□□□ -1.29
LIMA1-216ENST00000552909 SERPIND1P05546 499 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 HSD3B1P14060 373 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 PVALBP20472 110 aaPredicted RBP7□□□□□ -1.29
LIMA1-216ENST00000552909 GALP22466 123 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 HSD3B2P26439 372 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 SLC1A3P43003 542 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 GCGRP47871 477 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 CENPAP49450 140 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 LIM2P55344 173 aa7□□□□□ -1.29
LIMA1-216ENST00000552909 SEC61A1P61619 476 aaKnown RBP7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms