RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 PNMTP11086 282 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 IDO1P14902 403 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 NCF2P19878 526 aaPredicted RBP7.36□□□□□ -1.23
USP28-215ENST00000545608 CALCRP30988 508 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 PDLIM4P50479 330 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 EGR4Q05215 589 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 LARS2Q15031 903 aaKnown RBP7.36□□□□□ -1.23
USP28-215ENST00000545608 PRAMEF8Q5VWM4 474 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 PRAMEF7Q5VXH5 474 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 ATG16L1Q676U5 607 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 ANKRD16Q6P6B7 361 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 ABHD12BQ7Z5M8 362 aaPredicted RBP7.36□□□□□ -1.23
USP28-215ENST00000545608 MFSD8Q8NHS3 518 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 TMEM158Q8WZ71 300 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 MAL2Q969L2 176 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 SLC25A36Q96CQ1 311 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 ITCHQ96J02 903 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 FOXN4Q96NZ1 517 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 ALKBH3Q96Q83 286 aaPredicted RBP7.36□□□□□ -1.23
USP28-215ENST00000545608 PTDSS2Q9BVG9 487 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 BEX2Q9BXY8 128 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 NELFAQ9H3P2 528 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 SEC61A2Q9H9S3 476 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 OBP2BQ9NPH6 170 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 SDR39U1Q9NRG7 319 aaPredicted RBP7.36□□□□□ -1.23
USP28-215ENST00000545608 TMEM160Q9NX00 188 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 ZIM2Q9NZV7 527 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 CRNNQ9UBG3 495 aaPredicted RBP7.36□□□□□ -1.23
USP28-215ENST00000545608 SEC14L4Q9UDX3 406 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 CDC42EP3Q9UKI2 254 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 RASD1Q9Y272 281 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 FBN1P35555 2871 aaKnown RBP7.36□□□□□ -1.23
USP28-215ENST00000545608 A0A096LPI6 279 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 ARPC4-TTLL3A0A0A6YYG9 625 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 CLIC1O00299 241 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 UBDO15205 165 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 LMX1BO60663 402 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 ZNF432O94892 652 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 HTR3BO95264 441 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 AHSA1O95433 338 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 IGLV1-44P01699 117 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 CRYAAP02489 173 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 OR4A8P0C604 315 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 CECR9P0C854 216 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 SERPINF1P36955 418 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 NR4A2P43354 598 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 RPS5P46782 204 aaKnown RBP7.35□□□□□ -1.23
USP28-215ENST00000545608 POLR2JP52435 117 aaKnown RBP7.35□□□□□ -1.23
USP28-215ENST00000545608 CLDN17P56750 224 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 UBE2NP61088 152 aaKnown RBP7.35□□□□□ -1.23
USP28-215ENST00000545608 ARF1P84077 181 aaKnown RBP7.35□□□□□ -1.23
USP28-215ENST00000545608 ROR2Q01974 943 aaKnown RBP7.35□□□□□ -1.23
USP28-215ENST00000545608 NAAAQ02083 359 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 HGFACQ04756 655 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 GGTLC2Q14390 218 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 RGNQ15493 299 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 ADIPOQQ15848 244 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 CARTPTQ16568 116 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 ZSWIM7Q19AV6 140 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 ZNF311Q5JNZ3 666 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 C6orf10Q5SRN2 563 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 LRFN4Q6PJG9 635 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 SLC2A7Q6PXP3 512 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 VHLLQ6RSH7 139 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 MSANTD1Q6ZTZ1 278 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 CROCCP2Q86T23 111 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 MYPOPQ86VE0 399 aaPredicted RBP7.35□□□□□ -1.23
USP28-215ENST00000545608 COMTD1Q86VU5 262 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 CELF2-AS1Q8N7Q2 184 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 ANKS4BQ8N8V4 417 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 MAGEE2Q8TD90 523 aaPredicted RBP7.35□□□□□ -1.23
USP28-215ENST00000545608 GTF2H4Q92759 462 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 KTI12Q96EK9 354 aaPredicted RBP7.35□□□□□ -1.23
USP28-215ENST00000545608 VRK1Q99986 396 aaPredicted RBP7.35□□□□□ -1.23
USP28-215ENST00000545608 KCNS3Q9BQ31 491 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 KATNB1Q9BVA0 655 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 LINC00470Q9BZP3 86 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 PAIP1Q9H074 479 aaKnown RBP7.35□□□□□ -1.23
USP28-215ENST00000545608 HEATR1Q9H583 2144 aaKnown RBP7.35□□□□□ -1.23
USP28-215ENST00000545608 RMND5AQ9H871 391 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 BCL2L10Q9HD36 194 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 CA10Q9NS85 328 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 B3GAT1Q9P2W7 334 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 IFT52Q9Y366 437 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 FBN3Q75N90 2809 aa7.35□□□□□ -1.23
USP28-215ENST00000545608 STAB1Q9NY15 2570 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 IGKV1D-42A0A075B6H8 117 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 IGHV4-61A0A0C4DH41 118 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 TMEM247A6NEH6 219 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 ZNF503-AS2A6NEH8 195 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 OR6C65A6NJZ3 312 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 B9A039 149 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 RPL36A-HNRNPH2H7BZ11 118 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 LCE2BO14633 110 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 FZD7O75084 574 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 IGKV3-15P01624 115 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 CELA3BP08861 270 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 CBR1P16152 277 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 ZNF43P17038 809 aa7.34□□□□□ -1.23
USP28-215ENST00000545608 HOXB9P17482 250 aaPredicted RBP7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms