RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 PIP5K1CO60331 668 aa10.83□□□□□ -0.68
DDX55-210ENST00000543016 MRPL33O75394 65 aaKnown RBP10.83□□□□□ -0.68
DDX55-210ENST00000543016 ADAP00813 363 aa10.83□□□□□ -0.68
DDX55-210ENST00000543016 MAKP20794 623 aa10.83□□□□□ -0.68
DDX55-210ENST00000543016 UQCRC1P31930 480 aa10.83□□□□□ -0.68
DDX55-210ENST00000543016 MS4A18Q3C1V0 323 aa10.83□□□□□ -0.68
DDX55-210ENST00000543016 PGBD2Q6P3X8 592 aa10.83□□□□□ -0.68
DDX55-210ENST00000543016 CREB3L2Q70SY1 520 aa10.83□□□□□ -0.68
DDX55-210ENST00000543016 ZNF771Q7L3S4 317 aaPredicted RBP10.83□□□□□ -0.68
DDX55-210ENST00000543016 MED12LQ86YW9 2145 aa10.83□□□□□ -0.68
DDX55-210ENST00000543016 TUSC5Q8IXB3 177 aa10.83□□□□□ -0.68
DDX55-210ENST00000543016 GCNT2Q8N0V5 402 aa10.83□□□□□ -0.68
DDX55-210ENST00000543016 LRRC17Q8N6Y2 441 aa10.83□□□□□ -0.68
DDX55-210ENST00000543016 CLDN22Q8N7P3 220 aa10.83□□□□□ -0.68
DDX55-210ENST00000543016 CNEP1R1Q8N9A8 125 aa10.83□□□□□ -0.68
DDX55-210ENST00000543016 NAXEQ8NCW5 288 aa10.83□□□□□ -0.68
DDX55-210ENST00000543016 OR10G2Q8NGC3 310 aa10.83□□□□□ -0.68
DDX55-210ENST00000543016 CA5BP1Q8WTZ4 195 aa10.83□□□□□ -0.68
DDX55-210ENST00000543016 STARD4Q96DR4 205 aa10.83□□□□□ -0.68
DDX55-210ENST00000543016 DNAJA3Q96EY1 480 aa10.83□□□□□ -0.68
DDX55-210ENST00000543016 FAM46AQ96IP4 442 aaKnown RBP10.83□□□□□ -0.68
DDX55-210ENST00000543016 ADAD1Q96M93 576 aaKnown RBP10.83□□□□□ -0.68
DDX55-210ENST00000543016 ZNF556Q9HAH1 456 aa10.83□□□□□ -0.68
DDX55-210ENST00000543016 NTN4Q9HB63 628 aa10.83□□□□□ -0.68
DDX55-210ENST00000543016 TAS2R5Q9NYW4 299 aa10.83□□□□□ -0.68
DDX55-210ENST00000543016 PDP1Q9P0J1 537 aaPredicted RBP10.83□□□□□ -0.68
DDX55-210ENST00000543016 B3GAT1Q9P2W7 334 aa10.83□□□□□ -0.68
DDX55-210ENST00000543016 FOXD3Q9UJU5 478 aaPredicted RBP10.83□□□□□ -0.68
DDX55-210ENST00000543016 PROCRQ9UNN8 238 aa10.83□□□□□ -0.68
DDX55-210ENST00000543016 NOSIPQ9Y314 301 aaKnown RBP10.83□□□□□ -0.68
DDX55-210ENST00000543016 U3KQV3 271 aa10.83□□□□□ -0.68
DDX55-210ENST00000543016 SPENQ96T58 3664 aaKnown RBP10.82□□□□□ -0.68
DDX55-210ENST00000543016 A0A1W2PRG6 482 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 CENPBD1B2RD01 187 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 G3V2T6 193 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 H3BNX3 289 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 RNF13O43567 381 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 RAMP1O60894 148 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 PTP4A3O75365 173 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 NDUFB2O95178 105 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 CLDN14O95500 239 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 APEHP13798 732 aaKnown RBP10.82□□□□□ -0.68
DDX55-210ENST00000543016 PTNP21246 168 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 CBLP22681 906 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 AHCYP23526 432 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 GPR4P46093 362 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 DAP3P51398 398 aaKnown RBP10.82□□□□□ -0.68
DDX55-210ENST00000543016 LSM11P83369 360 aaKnown RBP eCLIP10.82□□□□□ -0.68
DDX55-210ENST00000543016 IL1RL1Q01638 556 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 RPL18Q07020 188 aaKnown RBP10.82□□□□□ -0.68
DDX55-210ENST00000543016 FOXF2Q12947 444 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 FBXL19-AS1Q494R0 122 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 ALG10Q5BKT4 473 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 FAM205BPQ63HN1 556 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 EPHX4Q8IUS5 362 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 CCDC71Q8IV32 467 aaPredicted RBP10.82□□□□□ -0.68
DDX55-210ENST00000543016 AQP11Q8NBQ7 271 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 SSC4DQ8WTU2 575 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 ITLN2Q8WWU7 325 aaPredicted RBP10.82□□□□□ -0.68
DDX55-210ENST00000543016 LRTOMTQ8WZ04 291 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 APH1AQ96BI3 265 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 KCNJ16Q9NPI9 418 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 INIPQ9NRY2 104 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 VNN3Q9NY84 501 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 JKAMPQ9P055 326 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 ENOPH1Q9UHY7 261 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 SIGLEC7Q9Y286 467 aa10.82□□□□□ -0.68
DDX55-210ENST00000543016 INTS1Q8N201 2190 aaKnown RBP10.82□□□□□ -0.68
DDX55-210ENST00000543016 NCOA6Q14686 2063 aaPredicted RBP10.81□□□□□ -0.68
DDX55-210ENST00000543016 SPTBN1Q01082 2364 aaKnown RBP10.81□□□□□ -0.68
DDX55-210ENST00000543016 ZNF726A6NNF4 738 aa10.81□□□□□ -0.68
DDX55-210ENST00000543016 A8MXE2 369 aa10.81□□□□□ -0.68
DDX55-210ENST00000543016 CDC42EP2O14613 210 aa10.81□□□□□ -0.68
DDX55-210ENST00000543016 TRAF3IP2O43734 574 aaPredicted RBP10.81□□□□□ -0.68
DDX55-210ENST00000543016 ZG16O60844 167 aa10.81□□□□□ -0.68
DDX55-210ENST00000543016 BCL10O95999 233 aa10.81□□□□□ -0.68
DDX55-210ENST00000543016 CGAP01215 116 aa10.81□□□□□ -0.68
DDX55-210ENST00000543016 GASTP01350 101 aa10.81□□□□□ -0.68
DDX55-210ENST00000543016 NR2C1P13056 603 aa10.81□□□□□ -0.68
DDX55-210ENST00000543016 KLK2P20151 261 aa10.81□□□□□ -0.68
DDX55-210ENST00000543016 BMP5P22003 454 aa10.81□□□□□ -0.68
DDX55-210ENST00000543016 PEX19P40855 299 aa10.81□□□□□ -0.68
DDX55-210ENST00000543016 AQP2P41181 271 aa10.81□□□□□ -0.68
DDX55-210ENST00000543016 OR3A2P47893 321 aa10.81□□□□□ -0.68
DDX55-210ENST00000543016 ASCL1P50553 236 aa10.81□□□□□ -0.68
DDX55-210ENST00000543016 POU3F1Q03052 451 aaPredicted RBP10.81□□□□□ -0.68
DDX55-210ENST00000543016 RFX4Q33E94 735 aa10.81□□□□□ -0.68
DDX55-210ENST00000543016 GPR139Q6DWJ6 353 aa10.81□□□□□ -0.68
DDX55-210ENST00000543016 SMARCD3Q6STE5 483 aa10.81□□□□□ -0.68
DDX55-210ENST00000543016 PLXDC2Q6UX71 529 aa10.81□□□□□ -0.68
DDX55-210ENST00000543016 NHLRC1Q6VVB1 395 aa10.81□□□□□ -0.68
DDX55-210ENST00000543016 DPY19L2P2Q6ZN68 376 aa10.81□□□□□ -0.68
DDX55-210ENST00000543016 RASSF6Q6ZTQ3 369 aa10.81□□□□□ -0.68
DDX55-210ENST00000543016 BEND4Q6ZU67 534 aa10.81□□□□□ -0.68
DDX55-210ENST00000543016 AAED1Q7RTV5 226 aa10.81□□□□□ -0.68
DDX55-210ENST00000543016 ABHD12BQ7Z5M8 362 aaPredicted RBP10.81□□□□□ -0.68
DDX55-210ENST00000543016 BTLAQ7Z6A9 289 aa10.81□□□□□ -0.68
DDX55-210ENST00000543016 ZNF100Q8IYN0 542 aa10.81□□□□□ -0.68
DDX55-210ENST00000543016 PQLC1Q8N2U9 271 aa10.81□□□□□ -0.68
DDX55-210ENST00000543016 ZIC4Q8N9L1 334 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms