RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	CHIA	Q9BZP6	476 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	UBE2Z	Q9H832	354 aa	Predicted RBP	11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	HRASLS	Q9HDD0	168 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	ANKRD10	Q9NXR5	420 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	RPS6KB2	Q9UBS0	482 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	KLK11	Q9UBX7	282 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	KCNN3	Q9UGI6	736 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	SERTAD3	Q9UJW9	196 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	SPEF1	Q9Y4P9	236 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	CLDN4	O14493	209 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	PIN1P1	O15428	100 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	ZNF217	O75362	1048 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	GATB	O75879	557 aa	Known RBP	11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	IFNA7	P01567	189 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	NME1	P15531	152 aa	Known RBP	11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	M6PR	P20645	277 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	CD27	P26842	260 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	GRPR	P30550	384 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	ACAA2	P42765	397 aa	Known RBP	11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	OR1D4	P47884	311 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	CCR9	P51686	369 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	CHCHD2P9	Q5T1J5	151 aa	Predicted RBP	11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	RPL22L1	Q6P5R6	122 aa	Known RBP	11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	FAM199X	Q6PEV8	388 aa	Predicted RBP	11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	ZCCHC12	Q6PEW1	402 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	BAIAP2L2	Q6UXY1	529 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	IDO2	Q6ZQW0	420 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	GKN2	Q86XP6	184 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	SYS1	Q8N2H4	156 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	FTMT	Q8N4E7	242 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	OR52I2	Q8NH67	350 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	C16orf52	Q8NHV5	167 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	ZDHHC19	Q8WVZ1	309 aa	Predicted RBP	11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	MARVELD3	Q96A59	401 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	TCTN2	Q96GX1	697 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	NMNAT3	Q96T66	252 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	ZNF426	Q9BUY5	554 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	PRDM9	Q9NQV7	894 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	COQ3	Q9NZJ6	369 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	UBQLN2	Q9UHD9	624 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	ICAM5	Q9UMF0	924 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	PPIE	Q9UNP9	301 aa	Known RBP	11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	MRPS33	Q9Y291	106 aa	Known RBP	11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	ASXL3	Q9C0F0	2248 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	CACNA1I	Q9P0X4	2223 aa		11.43	□□□□□ -0.58
RNF4-222	ENST00000541204	METTL12	A8MUP2	240 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204		B8ZZF3	427 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	CTNS	O60931	367 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	PTHLH	P12272	177 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	LCN1	P31025	176 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	BLVRA	P53004	296 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	SMAD4	Q13485	552 aa	Known RBP	11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	STPG1	Q5TH74	334 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	TTLL10	Q6ZVT0	673 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	FCRLA	Q7L513	359 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	SLITRK4	Q8IW52	837 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	ZNF321P	Q8N8H1	164 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	ZPLD1	Q8TCW7	415 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	VSTM2L	Q96N03	204 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	PNO1	Q9NRX1	252 aa	Known RBP	11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	DNAJB12	Q9NXW2	375 aa	Known RBP	11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	SEC16A	O15027	2179 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204		A0A087WV48	116 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	KHNYN	O15037	678 aa	Known RBP	11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	SRPX2	O60687	465 aa	Predicted RBP	11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	SERPINI2	O75830	405 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	NDUFB2	O95178	105 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	HRG	P04196	525 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	RPL4	P36578	427 aa	Known RBP	11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	PON3	Q15166	354 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	GRK1	Q15835	563 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	FAAP20	Q6NZ36	180 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	POMGNT2	Q8NAT1	580 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	OR6K6	Q8NGW6	343 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	SLC25A38	Q96DW6	304 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	MSANTD3	Q96H12	275 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	NCDN	Q9UBB6	729 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	DHCR7	Q9UBM7	475 aa	Known RBP	11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	FBXL21	Q9UKT6	434 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204	NPTN	Q9Y639	398 aa		11.42	□□□□□ -0.58
RNF4-222	ENST00000541204		A0A1W2PR77	199 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	IFITM5	A6NNB3	132 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	RHPN2P1	A8MT19	583 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	FAM171A2	A8MVW0	826 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	CHURC1-FNTB	B4DL54	471 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	ZNF879	B4DU55	563 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	AK1	P00568	194 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	PSMB1	P20618	241 aa	Known RBP	11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	FASLG	P48023	281 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	FNTB	P49356	437 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	OR1D5	P58170	312 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	IKZF1	Q13422	519 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	CLLU1	Q5K131	121 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	GLRX5	Q86SX6	157 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	OR14A16	Q8NHC5	309 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	DNAJA3	Q96EY1	480 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	DDO	Q99489	341 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	SEC22C	Q9BRL7	303 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	OR10A5	Q9H207	317 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	LIN7B	Q9HAP6	207 aa		11.41	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms