RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 RP2O75695 350 aa9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 TFPTP0C1Z6 253 aa9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 MYZAPP0CAP1 466 aa9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 ZNF35P13682 527 aa9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 IL7RP16871 459 aa9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 ADRA2CP18825 462 aa9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 CAPZA2P47755 286 aa9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 CLDN17P56750 224 aa9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 BNIP2Q12982 314 aa9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 CEACAM16Q2WEN9 425 aa9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 KRT71Q3SY84 523 aa9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 C1orf140Q5VVS0 124 aa9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 SAXO2Q658L1 398 aa9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 ZNF440Q8IYI8 595 aa9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 KDM8Q8N371 416 aa9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 OR8J2Q8NGG1 315 aa9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 RNF217Q8TC41 542 aa9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 AGR3Q8TD06 166 aa9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 EPS8L3Q8TE67 593 aaKnown RBP9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 ZBTB9Q96C00 473 aa9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 ZNF837Q96EG3 531 aaPredicted RBP9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 NEURL3Q96EH8 262 aa9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 TRNT1Q96Q11 434 aaKnown RBP9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 ZNF385DQ9H6B1 395 aa9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 TMBIM4Q9HC24 238 aa9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 FAM53CQ9NYF3 392 aa9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 RCE1Q9Y256 329 aa9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 PPIAL4AQ9Y536 164 aa9.96□□□□□ -0.82
CLSTN3-209ENST00000539982 PRSS51A0A1B0GVH4 220 aa9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 TLDC2A0PJX2 215 aa9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 SMIM23A6NLE4 172 aa9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 HMGN4O00479 90 aa9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 FRS3O43559 492 aa9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 NPIPB7O75200 414 aa9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 PRSS23O95084 383 aa9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 CPSF4O95639 269 aaKnown RBP9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 DBIP07108 87 aaKnown RBP9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 NAT2P11245 290 aa9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 ZNF43P17038 809 aa9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 RPS4Y1P22090 263 aaKnown RBP9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 GATA3P23771 443 aa9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 ACAA2P42765 397 aaKnown RBP9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 EMX2Q04743 252 aa9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 MAD2L1Q13257 205 aaPredicted RBP9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 MAD2L1BPQ15013 274 aaPredicted RBP9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 SYPL1Q16563 259 aa9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 FXNQ16595 210 aa9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 TRMT5Q32P41 509 aaKnown RBP9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 MMEL1Q495T6 779 aa9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 MRPL2Q5T653 305 aaKnown RBP9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 DCAF12L2Q5VW00 463 aa9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 LRRC74BQ6ZQY2 392 aa9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 LRP11Q86VZ4 500 aa9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 GPR137CQ8N3F9 429 aa9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 ANKFN1Q8N957 763 aa9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 VPS37AQ8NEZ2 397 aa9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 MFSD8Q8NHS3 518 aa9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 TUBGCP3Q96CW5 907 aa9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 MS4A3Q96HJ5 214 aa9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 DPY30Q9C005 99 aa9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 SLC38A1Q9H2H9 487 aa9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 C7orf69Q9H7B7 122 aa9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 UNKLQ9H9P5 680 aaKnown RBP9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 MYEF2Q9P2K5 600 aaKnown RBP9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 MARCOQ9UEW3 520 aaPredicted RBP9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 DUSP13Q9UII6 198 aa9.95□□□□□ -0.82
CLSTN3-209ENST00000539982 A0A096LPI6 279 aa9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 POM121CA8CG34 1229 aa9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 ZNF99A8MXY4 864 aaPredicted RBP9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 DEAF1O75398 565 aaPredicted RBP9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 NCR1O76036 304 aa9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 HLA-HP01893 362 aa9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 GKN3PP0CG01 181 aa9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 PNMTP11086 282 aa9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 ZNF14P17017 642 aaPredicted RBP9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 KRT4P19013 534 aa9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 PRTN3P24158 256 aa9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 ALDH3A1P30838 453 aa9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 CHI3L1P36222 383 aaPredicted RBP9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 COPZ1P61923 177 aa9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 RPS23P62266 143 aaKnown RBP9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 MVKQ03426 396 aa9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 ZP4Q12836 540 aa9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 GSG1Q2KHT4 349 aa9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 AGBL2Q5U5Z8 902 aa9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 GKAP1Q5VSY0 366 aaPredicted RBP9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 ANXA8L1Q5VT79 327 aa9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 WBP2NLQ6ICG8 309 aa9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 RBMS3Q6XE24 437 aaKnown RBP9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 ANKRD46Q86W74 232 aa9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 CADM2Q8N3J6 435 aa9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 PIK3C3Q8NEB9 887 aa9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 STK35Q8TDR2 534 aa9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 C22orf15Q8WYQ4 148 aa9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 DVL3Q92997 716 aaPredicted RBP9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 SLC25A36Q96CQ1 311 aa9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 LRRC58Q96CX6 371 aa9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 RAB39BQ96DA2 213 aa9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 ZNF75AQ96N20 296 aa9.94□□□□□ -0.82
CLSTN3-209ENST00000539982 OXGR1Q96P68 337 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms