RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 NAT9Q9BTE0 207 aa2.15□□□□□ -2.07
CD44-234ENST00000531873 ACTR6Q9GZN1 396 aa2.15□□□□□ -2.07
CD44-234ENST00000531873 EHD1Q9H4M9 534 aa2.15□□□□□ -2.07
CD44-234ENST00000531873 PTGES2Q9H7Z7 377 aa2.15□□□□□ -2.07
CD44-234ENST00000531873 SLC7A10Q9NS82 523 aa2.15□□□□□ -2.07
CD44-234ENST00000531873 MARCH5Q9NX47 278 aa2.15□□□□□ -2.07
CD44-234ENST00000531873 GCNT4Q9P109 453 aa2.15□□□□□ -2.07
CD44-234ENST00000531873 B4GALT7Q9UBV7 327 aa2.15□□□□□ -2.07
CD44-234ENST00000531873 TP53BP1Q12888 1972 aaPredicted RBP2.15□□□□□ -2.07
CD44-234ENST00000531873 NOTCH3Q9UM47 2321 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 INSRP06213 1382 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 TRBV11-1A0A0K0K1C0 115 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 NCF1BA6NI72 391 aaPredicted RBP2.14□□□□□ -2.07
CD44-234ENST00000531873 LRRIQ4A6NIV6 560 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 NCF1CA8MVU1 366 aaPredicted RBP2.14□□□□□ -2.07
CD44-234ENST00000531873 EIF3HO15372 352 aaKnown RBP eCLIP2.14□□□□□ -2.07
CD44-234ENST00000531873 OR2J3O76001 311 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 OR2F2O95006 317 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 H6PDO95479 791 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 KLK3P07288 261 aaPredicted RBP2.14□□□□□ -2.07
CD44-234ENST00000531873 TBPP20226 339 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 PRDX3P30048 256 aaKnown RBP2.14□□□□□ -2.07
CD44-234ENST00000531873 OTX1P32242 354 aaPredicted RBP2.14□□□□□ -2.07
CD44-234ENST00000531873 NSG1P42857 185 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 RGRP47804 291 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 NPBWR2P48146 333 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 P2RY4P51582 365 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 FBXW4P57775 412 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 KRTAP10-12P60413 245 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 SELENOTP62341 195 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 CSNK1G2P78368 415 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 TGFBR3Q03167 851 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 TLE4Q04727 773 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 ILKQ13418 452 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 TGFBIQ15582 683 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 CHRNA6Q15825 494 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 VPS26BQ4G0F5 336 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 VAX1Q5SQQ9 334 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 SLC25A30Q5SVS4 291 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 ZNF544Q6NX49 715 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 IL34Q6ZMJ4 242 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 Q6ZN92 141 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 ZNF836Q6ZNA1 936 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 Q6ZR54 194 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 SCD5Q86SK9 330 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 PRR22Q8IZ63 422 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 CCDC71LQ8N9Z2 235 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 OR6C4Q8NGE1 309 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 OR1S2Q8NGQ3 325 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 OR9A1PQ8NGU1 263 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 SLC22A8Q8TCC7 542 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 SMARCD2Q92925 531 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 RPUSD4Q96CM3 377 aaKnown RBP2.14□□□□□ -2.07
CD44-234ENST00000531873 FAM122AQ96E09 287 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 HIST1H4GQ99525 98 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 TSG101Q99816 390 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 ARHGDIGQ99819 225 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 BPIFA3Q9BQP9 254 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 EBF4Q9BQW3 602 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 TMEM59Q9BXS4 323 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 OR51J1Q9H342 316 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 ZDHHC11Q9H8X9 412 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 ADAP2Q9NPF8 381 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 RPS10P5Q9NQ39 176 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 TNFRSF19Q9NS68 423 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 QPCTLQ9NXS2 382 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 CD274Q9NZQ7 290 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 PITPNC1Q9UKF7 332 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 CLEC4EQ9ULY5 219 aa2.14□□□□□ -2.07
CD44-234ENST00000531873 ZNF256Q9Y2P7 627 aaPredicted RBP2.14□□□□□ -2.07
CD44-234ENST00000531873 ZNF646O15015 1829 aaPredicted RBP2.13□□□□□ -2.07
CD44-234ENST00000531873 ARHGAP21Q5T5U3 1957 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 A0A0J9YXY3 114 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 PSMB11A5LHX3 300 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 C12orf77C9JDV5 145 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 KRTAP4-16G5E9R7 235 aaPredicted RBP2.13□□□□□ -2.07
CD44-234ENST00000531873 CCL21O00585 134 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 RAB29O14966 203 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 CASC3O15234 703 aaKnown RBP2.13□□□□□ -2.07
CD44-234ENST00000531873 CLOCKO15516 846 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 SRSF10O75494 262 aaKnown RBP2.13□□□□□ -2.07
CD44-234ENST00000531873 SNAPINO95295 136 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 C2P06681 752 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 ANXA5P08758 320 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 ABOP16442 354 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 PSMB1P20618 241 aaKnown RBP2.13□□□□□ -2.07
CD44-234ENST00000531873 IFNA8P32881 189 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 RORAP35398 523 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 ATP5C1P36542 298 aaKnown RBP2.13□□□□□ -2.07
CD44-234ENST00000531873 VDAC2P45880 294 aaPredicted RBP2.13□□□□□ -2.07
CD44-234ENST00000531873 RPS5P46782 204 aaKnown RBP2.13□□□□□ -2.07
CD44-234ENST00000531873 CSNK1EP49674 416 aaKnown RBP2.13□□□□□ -2.07
CD44-234ENST00000531873 RAB9AP51151 201 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 GPX6P59796 221 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 IGLV3-21P80748 117 aaPredicted RBP2.13□□□□□ -2.07
CD44-234ENST00000531873 MRPS22P82650 360 aaKnown RBP2.13□□□□□ -2.07
CD44-234ENST00000531873 MERTKQ12866 999 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 MARCH8Q5T0T0 291 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 CTRB2Q6GPI1 263 aa2.13□□□□□ -2.07
CD44-234ENST00000531873 MFSD6LQ8IWD5 586 aa2.13□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms