RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 LOC102725191A0A1B0GVB3 256 aa9.84□□□□□ -0.83
VPS28-214ENST00000531032 HMGB1P1B2RPK0 211 aaPredicted RBP9.84□□□□□ -0.83
VPS28-214ENST00000531032 OR2T1O43869 369 aa9.84□□□□□ -0.83
VPS28-214ENST00000531032 SLC43A1O75387 559 aa9.84□□□□□ -0.83
VPS28-214ENST00000531032 CELA3BP08861 270 aa9.84□□□□□ -0.83
VPS28-214ENST00000531032 CBR1P16152 277 aa9.84□□□□□ -0.83
VPS28-214ENST00000531032 ZNF23P17027 643 aa9.84□□□□□ -0.83
VPS28-214ENST00000531032 GTF2E2P29084 291 aaKnown RBP9.84□□□□□ -0.83
VPS28-214ENST00000531032 PRKAR1BP31321 381 aa9.84□□□□□ -0.83
VPS28-214ENST00000531032 IDH3GP51553 393 aaPredicted RBP9.84□□□□□ -0.83
VPS28-214ENST00000531032 ARF1P84077 181 aaKnown RBP9.84□□□□□ -0.83
VPS28-214ENST00000531032 HGFACQ04756 655 aa9.84□□□□□ -0.83
VPS28-214ENST00000531032 CARTPTQ16568 116 aa9.84□□□□□ -0.83
VPS28-214ENST00000531032 TTMPQ5BVD1 217 aa9.84□□□□□ -0.83
VPS28-214ENST00000531032 FAM69AQ5T7M9 428 aa9.84□□□□□ -0.83
VPS28-214ENST00000531032 VHLLQ6RSH7 139 aa9.84□□□□□ -0.83
VPS28-214ENST00000531032 C5orf46Q6UWT4 87 aa9.84□□□□□ -0.83
VPS28-214ENST00000531032 LSMEM1Q8N8F7 131 aa9.84□□□□□ -0.83
VPS28-214ENST00000531032 ZNF540Q8NDQ6 660 aa9.84□□□□□ -0.83
VPS28-214ENST00000531032 BBS10Q8TAM1 723 aa9.84□□□□□ -0.83
VPS28-214ENST00000531032 MAL2Q969L2 176 aa9.84□□□□□ -0.83
VPS28-214ENST00000531032 C7orf26Q96N11 449 aa9.84□□□□□ -0.83
VPS28-214ENST00000531032 OR52B2Q96RD2 323 aa9.84□□□□□ -0.83
VPS28-214ENST00000531032 RSPO3Q9BXY4 272 aaPredicted RBP9.84□□□□□ -0.83
VPS28-214ENST00000531032 PAIP1Q9H074 479 aaKnown RBP9.84□□□□□ -0.83
VPS28-214ENST00000531032 RAB1BQ9H0U4 201 aa9.84□□□□□ -0.83
VPS28-214ENST00000531032 RAD21L1Q9H4I0 556 aa9.84□□□□□ -0.83
VPS28-214ENST00000531032 CHODLQ9H9P2 273 aa9.84□□□□□ -0.83
VPS28-214ENST00000531032 GPR35Q9HC97 309 aa9.84□□□□□ -0.83
VPS28-214ENST00000531032 IGKV1D-42A0A075B6H8 117 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 IGHV2OR16-5A0A0B4J2B6 119 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 ZNF503-AS2A6NEH8 195 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 ZNF99A8MXY4 864 aaPredicted RBP9.83□□□□□ -0.84
VPS28-214ENST00000531032 hCG_2039718K7EN88 272 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 M0R082 166 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 CLIC1O00299 241 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 AIM2O14862 343 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 TRAF3IP2O43734 574 aaPredicted RBP9.83□□□□□ -0.84
VPS28-214ENST00000531032 ETS2P15036 469 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 NPR2P20594 1047 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 HNF1AP20823 631 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 GIFP27352 417 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 HTR2AP28223 471 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 ARR3P36575 388 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 MRPL19P49406 292 aaKnown RBP9.83□□□□□ -0.84
VPS28-214ENST00000531032 CEACAM16Q2WEN9 425 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 IQCCQ4KMZ1 466 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 IL17RELQ6ZVW7 336 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 COMTD1Q86VU5 262 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 CCDC36Q8IYA8 594 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 TMEM123Q8N131 208 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 ADPRHL1Q8NDY3 354 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 ZNF417Q8TAU3 575 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 SLC38A4Q969I6 547 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 TAAR8Q969N4 342 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 ZNF837Q96EG3 531 aaPredicted RBP9.83□□□□□ -0.84
VPS28-214ENST00000531032 ANKRD27Q96NW4 1050 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 OR2M2Q96R28 347 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 ZNF587Q96SQ5 575 aaPredicted RBP9.83□□□□□ -0.84
VPS28-214ENST00000531032 DOK1Q99704 481 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 SOX7Q9BT81 388 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 CRLF2Q9HC73 371 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 TCF7L2Q9NQB0 619 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 INTS9Q9NV88 658 aaKnown RBP9.83□□□□□ -0.84
VPS28-214ENST00000531032 KLHL14Q9P2G3 628 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 RPS6KB2Q9UBS0 482 aa9.83□□□□□ -0.84
VPS28-214ENST00000531032 TRAV36DV7A0A075B6V5 113 aa9.82□□□□□ -0.84
VPS28-214ENST00000531032 A0A1B0GWA3 101 aa9.82□□□□□ -0.84
VPS28-214ENST00000531032 TMEM129A0AVI4 362 aa9.82□□□□□ -0.84
VPS28-214ENST00000531032 AKAP8O43823 692 aaKnown RBP9.82□□□□□ -0.84
VPS28-214ENST00000531032 STAMBPO95630 424 aa9.82□□□□□ -0.84
VPS28-214ENST00000531032 TGFAP01135 160 aa9.82□□□□□ -0.84
VPS28-214ENST00000531032 ERCC1P07992 297 aaPredicted RBP9.82□□□□□ -0.84
VPS28-214ENST00000531032 IGFBP1P08833 259 aaPredicted RBP9.82□□□□□ -0.84
VPS28-214ENST00000531032 TACSTD2P09758 323 aa9.82□□□□□ -0.84
VPS28-214ENST00000531032 DAOP14920 347 aa9.82□□□□□ -0.84
VPS28-214ENST00000531032 GRPRP30550 384 aa9.82□□□□□ -0.84
VPS28-214ENST00000531032 THBS4P35443 961 aa9.82□□□□□ -0.84
VPS28-214ENST00000531032 POU3F1Q03052 451 aaPredicted RBP9.82□□□□□ -0.84
VPS28-214ENST00000531032 C1DQ13901 141 aaKnown RBP9.82□□□□□ -0.84
VPS28-214ENST00000531032 LRIF1Q5T3J3 769 aa9.82□□□□□ -0.84
VPS28-214ENST00000531032 FAM91A1Q658Y4 838 aa9.82□□□□□ -0.84
VPS28-214ENST00000531032 DHRS4L2Q6PKH6 230 aa9.82□□□□□ -0.84
VPS28-214ENST00000531032 SLC2A7Q6PXP3 512 aa9.82□□□□□ -0.84
VPS28-214ENST00000531032 H1FNTQ75WM6 255 aaPredicted RBP9.82□□□□□ -0.84
VPS28-214ENST00000531032 NET1Q7Z628 596 aaPredicted RBP9.82□□□□□ -0.84
VPS28-214ENST00000531032 MSRB3Q8IXL7 192 aa9.82□□□□□ -0.84
VPS28-214ENST00000531032 GPR137CQ8N3F9 429 aa9.82□□□□□ -0.84
VPS28-214ENST00000531032 SVOPLQ8N434 492 aa9.82□□□□□ -0.84
VPS28-214ENST00000531032 PIK3C3Q8NEB9 887 aa9.82□□□□□ -0.84
VPS28-214ENST00000531032 IL17RDQ8NFM7 739 aa9.82□□□□□ -0.84
VPS28-214ENST00000531032 DNAJA4Q8WW22 397 aaPredicted RBP9.82□□□□□ -0.84
VPS28-214ENST00000531032 NEU4Q8WWR8 484 aaPredicted RBP9.82□□□□□ -0.84
VPS28-214ENST00000531032 SLC41A3Q96GZ6 507 aa9.82□□□□□ -0.84
VPS28-214ENST00000531032 C19orf24Q9BVV8 132 aa9.82□□□□□ -0.84
VPS28-214ENST00000531032 SLCO1B3Q9NPD5 702 aa9.82□□□□□ -0.84
VPS28-214ENST00000531032 SLC25A37Q9NYZ2 338 aa9.82□□□□□ -0.84
VPS28-214ENST00000531032 GMEB1Q9Y692 573 aa9.82□□□□□ -0.84
VPS28-214ENST00000531032 LRP5LA4QPB2 252 aa9.81□□□□□ -0.84
VPS28-214ENST00000531032 VSTM5A8MXK1 200 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms