RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 DBPQ10586 325 aaPredicted RBP13.5□□□□□ -0.25
NUP54-217ENST00000514987 CBFBQ13951 182 aa13.5□□□□□ -0.25
NUP54-217ENST00000514987 CDK10Q15131 360 aa13.5□□□□□ -0.25
NUP54-217ENST00000514987 PLA1AQ53H76 456 aa13.5□□□□□ -0.25
NUP54-217ENST00000514987 ARHGAP40Q5TG30 622 aa13.5□□□□□ -0.25
NUP54-217ENST00000514987 TMEM53Q6P2H8 277 aa13.5□□□□□ -0.25
NUP54-217ENST00000514987 MAMDC2Q7Z304 686 aaPredicted RBP13.5□□□□□ -0.25
NUP54-217ENST00000514987 CDH24Q86UP0 819 aa13.5□□□□□ -0.25
NUP54-217ENST00000514987 CDC20BQ86Y33 519 aa13.5□□□□□ -0.25
NUP54-217ENST00000514987 MISPQ8IVT2 679 aa13.5□□□□□ -0.25
NUP54-217ENST00000514987 TIGD4Q8IY51 512 aa13.5□□□□□ -0.25
NUP54-217ENST00000514987 ZNF671Q8TAW3 534 aa13.5□□□□□ -0.25
NUP54-217ENST00000514987 UPRTQ96BW1 309 aa13.5□□□□□ -0.25
NUP54-217ENST00000514987 KTI12Q96EK9 354 aaPredicted RBP13.5□□□□□ -0.25
NUP54-217ENST00000514987 ABHD1Q96SE0 405 aa13.5□□□□□ -0.25
NUP54-217ENST00000514987 DPYSL5Q9BPU6 564 aa13.5□□□□□ -0.25
NUP54-217ENST00000514987 TTTY10Q9BZA0 68 aa13.5□□□□□ -0.25
NUP54-217ENST00000514987 DPAGT1Q9H3H5 408 aa13.5□□□□□ -0.25
NUP54-217ENST00000514987 NIPAL2Q9H841 368 aa13.5□□□□□ -0.25
NUP54-217ENST00000514987 ZNF275Q9NSD4 429 aaPredicted RBP13.5□□□□□ -0.25
NUP54-217ENST00000514987 DHCR7Q9UBM7 475 aaKnown RBP13.5□□□□□ -0.25
NUP54-217ENST00000514987 SRPK3Q9UPE1 567 aa13.5□□□□□ -0.25
NUP54-217ENST00000514987 A8MU76 341 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 AIPO00170 330 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 BCAT2O15382 392 aaPredicted RBP13.49□□□□□ -0.25
NUP54-217ENST00000514987 EEF1E1O43324 174 aaKnown RBP13.49□□□□□ -0.25
NUP54-217ENST00000514987 TPPPO94811 219 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 PAHP00439 452 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 BGLAPP02818 100 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 GSTT2P0CG29 244 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 GSTT2BP0CG30 244 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 ITPKBP27987 946 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 PSMB10P40306 273 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 POLR2HP52434 150 aaKnown RBP13.49□□□□□ -0.25
NUP54-217ENST00000514987 RRAS2P62070 204 aaPredicted RBP13.49□□□□□ -0.25
NUP54-217ENST00000514987 SF3B4Q15427 424 aaKnown RBP eCLIP13.49□□□□□ -0.252e-6■■□□□ 13.6
NUP54-217ENST00000514987 CCDC85BQ15834 202 aaPredicted RBP13.49□□□□□ -0.25
NUP54-217ENST00000514987 EEF1A1P5Q5VTE0 462 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 C9orf40Q8IXQ3 194 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 ZPLD1Q8TCW7 415 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 C15orf40Q8WUR7 153 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 TAAR8Q969N4 342 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 TTYH1Q9H313 450 aaPredicted RBP13.49□□□□□ -0.25
NUP54-217ENST00000514987 WDR76Q9H967 626 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 RANGRFQ9HD47 186 aaPredicted RBP13.49□□□□□ -0.25
NUP54-217ENST00000514987 NOX4Q9NPH5 578 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 XKRYO14609 159 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 MAGEB4O15481 346 aaPredicted RBP13.49□□□□□ -0.25
NUP54-217ENST00000514987 SERPINI2O75830 405 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 CALCBP10092 127 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 SNRPBP14678 240 aaKnown RBP13.49□□□□□ -0.25
NUP54-217ENST00000514987 FOLR1P15328 257 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 ARSBP15848 533 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 P2RX1P51575 399 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 ZP2Q05996 745 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 DYRK1AQ13627 763 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 ALKBH1Q13686 389 aaKnown RBP13.49□□□□□ -0.25
NUP54-217ENST00000514987 NTRK2Q16620 822 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 SLC22A10Q63ZE4 541 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 ASB18Q6ZVZ8 466 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 LSRQ86X29 649 aaPredicted RBP13.49□□□□□ -0.25
NUP54-217ENST00000514987 PRR22Q8IZ63 422 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 GHDCQ8N2G8 530 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 TOMM5Q8N4H5 51 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 EID2Q8N6I1 236 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 YIPF7Q8N8F6 280 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 ZNF441Q8N8Z8 693 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 ZNF511Q8NB15 262 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 OR5H6Q8NGV6 325 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 OR5AK2Q8NH90 309 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 AKAP1Q92667 903 aaKnown RBP eCLIP13.49□□□□□ -0.25
NUP54-217ENST00000514987 OMA1Q96E52 524 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 RNF170Q96K19 258 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 DMRTB1Q96MA1 342 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 DERL3Q96Q80 235 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 TSPAN32Q96QS1 320 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 PDCD1LG2Q9BQ51 273 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 TGIF2Q9GZN2 237 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 ZNF768Q9H5H4 540 aaKnown RBP13.49□□□□□ -0.25
NUP54-217ENST00000514987 SLA2Q9H6Q3 261 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 LAMP5Q9UJQ1 280 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 AK6Q9Y3D8 172 aaKnown RBP13.49□□□□□ -0.25
NUP54-217ENST00000514987 NUBP2Q9Y5Y2 271 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 V9GY05 133 aa13.49□□□□□ -0.25
NUP54-217ENST00000514987 SPTBP11277 2137 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 CEP192Q8TEP8 1941 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 A0A1B0GVT2 93 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 TMEM72A0PK05 275 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 IFITM5A6NNB3 132 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 A8MV72 311 aaPredicted RBP13.48□□□□□ -0.25
NUP54-217ENST00000514987 SULT1B1O43704 296 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 LANCL1O43813 399 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 PRKNO60260 465 aaPredicted RBP13.48□□□□□ -0.25
NUP54-217ENST00000514987 ZFPL1O95159 310 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 RAF1P04049 648 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 F13BP05160 661 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 PRKCAP17252 672 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 RAG2P55895 527 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 SCAND1P57086 179 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 CD83Q01151 205 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms