RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 DNAJC13O75165 2243 aa7.94□□□□□ -1.14
LIMCH1-209ENST00000509277 ATRXP46100 2492 aa7.94□□□□□ -1.14
LIMCH1-209ENST00000509277 LOC101059948A0A1B0GTJ6 334 aa7.94□□□□□ -1.14
LIMCH1-209ENST00000509277 FITM1A5D6W6 292 aa7.94□□□□□ -1.14
LIMCH1-209ENST00000509277 FMO6PO60774 539 aa7.94□□□□□ -1.14
LIMCH1-209ENST00000509277 ACP2P11117 423 aa7.94□□□□□ -1.14
LIMCH1-209ENST00000509277 CAPZA1P52907 286 aa7.94□□□□□ -1.14
LIMCH1-209ENST00000509277 GBX2P52951 348 aaPredicted RBP7.94□□□□□ -1.14
LIMCH1-209ENST00000509277 POLR2GP62487 172 aaKnown RBP eCLIP7.94□□□□□ -1.14
LIMCH1-209ENST00000509277 LRIF1Q5T3J3 769 aa7.94□□□□□ -1.14
LIMCH1-209ENST00000509277 PRAMEF20Q5VT98 475 aa7.94□□□□□ -1.14
LIMCH1-209ENST00000509277 C8orf82Q6P1X6 216 aaPredicted RBP7.94□□□□□ -1.14
LIMCH1-209ENST00000509277 ZAR1Q86SH2 424 aa7.94□□□□□ -1.14
LIMCH1-209ENST00000509277 PIP4P1Q86T03 277 aa7.94□□□□□ -1.14
LIMCH1-209ENST00000509277 PTOV1Q86YD1 416 aa7.94□□□□□ -1.14
LIMCH1-209ENST00000509277 TOMM5Q8N4H5 51 aa7.94□□□□□ -1.14
LIMCH1-209ENST00000509277 TMEM156Q8N614 296 aa7.94□□□□□ -1.14
LIMCH1-209ENST00000509277 SPSB2Q99619 263 aa7.94□□□□□ -1.14
LIMCH1-209ENST00000509277 TREX2Q9BQ50 279 aaPredicted RBP7.94□□□□□ -1.14
LIMCH1-209ENST00000509277 TSSK6Q9BXA6 273 aa7.94□□□□□ -1.14
LIMCH1-209ENST00000509277 TWSG1Q9GZX9 223 aa7.94□□□□□ -1.14
LIMCH1-209ENST00000509277 C14orf105Q9NVL8 296 aa7.94□□□□□ -1.14
LIMCH1-209ENST00000509277 DLL3Q9NYJ7 618 aa7.94□□□□□ -1.14
LIMCH1-209ENST00000509277 CORO2BQ9UQ03 480 aa7.94□□□□□ -1.14
LIMCH1-209ENST00000509277 LOC100509620A0A075B734 347 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 A0A0B4J203 849 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 ARGFXA6NJG6 315 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 ZNF705EA8MWA4 302 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 FAM25EA8MYX2 175 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 BRINP1O60477 761 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 GADD45GO95257 159 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 HOXD4P09016 255 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 PLCXD2Q0VAA5 305 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 FADDQ13158 208 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 USF2Q15853 346 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 ZNF311Q5JNZ3 666 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 B3GNTL1Q67FW5 361 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 REEP3Q6NUK4 255 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 XKRXQ6PP77 449 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 SMARCD3Q6STE5 483 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 C3P1Q6ZMU1 363 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 PRSS45Q7RTY3 260 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 CPEB2Q7Z5Q1 589 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 ANKRD37Q7Z713 158 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 CARFQ8N187 725 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 OR5J2Q8NH18 312 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 PTPMT1Q8WUK0 201 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 NEURL3Q96EH8 262 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 SLC6A15Q9H2J7 730 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 TMEM231Q9H6L2 316 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 NIPAL2Q9H841 368 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 B3GAT2Q9NPZ5 323 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 MGAT4CQ9UBM8 478 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 FBXL3Q9UKT7 428 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 NDRG4Q9ULP0 352 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 PRAMEF2O60811 474 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 FARS2O95363 451 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 CHRM4P08173 479 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 RORAP35398 523 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 ZNF628Q5EBL2 1059 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 COQ5Q5HYK3 327 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 KDM4DQ6B0I6 523 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 ZNF600Q6ZNG1 722 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 RRM2BQ7LG56 351 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 RBM45Q8IUH3 476 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 CBLN2Q8IUK8 224 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 CMIPQ8IY22 773 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 SETD6Q8TBK2 473 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 PHOSPHO1Q8TCT1 267 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 GRHL3Q8TE85 626 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 OR1F2PQ96R84 312 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 LIN7BQ9HAP6 207 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 TXNL4BQ9NX01 149 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 C19orf25Q9UFG5 118 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 TCFL5Q9UL49 500 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 NTNG1Q9Y2I2 539 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 PCDHGB3Q9Y5G1 929 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 PCDHGA1Q9Y5H4 931 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 DSPP15924 2871 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 CENPVL1A0A0U1RR11 272 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 hCG_1807616A0A1W2PRN6 198 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 AGPAT2O15120 278 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 OPN1LWP04000 364 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 GPX2P18283 190 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 SOX18P35713 384 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 ILKQ13418 452 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 ZNF273Q14593 569 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 OPCMLQ14982 345 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 ELAVL1Q15717 326 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 SPATS1Q496A3 300 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 DCST2Q5T1A1 773 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 PYHIN1Q6K0P9 492 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 TCTN3Q6NUS6 607 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 ZNF433Q8N7K0 673 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 AP3S1Q92572 193 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 ZNF607Q96SK3 696 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 TGIF2Q9GZN2 237 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 THSD1Q9NS62 852 aa7.93□□□□□ -1.14
LIMCH1-209ENST00000509277 TAS2R7Q9NYW3 318 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 92.8 ms