RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 P2RY8Q86VZ1 359 aa14.04□□□□□ -0.16
LIME1-209ENST00000494776 PLPPR2Q96GM1 343 aa14.04□□□□□ -0.16
LIME1-209ENST00000494776 ZNF426Q9BUY5 554 aa14.04□□□□□ -0.16
LIME1-209ENST00000494776 RHCGQ9UBD6 479 aa14.04□□□□□ -0.16
LIME1-209ENST00000494776 ZNF229Q9UJW7 825 aa14.04□□□□□ -0.16
LIME1-209ENST00000494776 A4GNTQ9UNA3 340 aa14.04□□□□□ -0.16
LIME1-209ENST00000494776 RCE1Q9Y256 329 aa14.04□□□□□ -0.16
LIME1-209ENST00000494776 FAM32AQ9Y421 112 aaKnown RBP14.04□□□□□ -0.16
LIME1-209ENST00000494776 NOX1Q9Y5S8 564 aa14.04□□□□□ -0.16
LIME1-209ENST00000494776 SNX13Q9Y5W8 968 aa14.04□□□□□ -0.16
LIME1-209ENST00000494776 OR5H1A6NKK0 313 aa14.03□□□□□ -0.16
LIME1-209ENST00000494776 ZNF726A6NNF4 738 aa14.03□□□□□ -0.16
LIME1-209ENST00000494776 J3KTA2 159 aa14.03□□□□□ -0.16
LIME1-209ENST00000494776 KLF4O43474 513 aa14.03□□□□□ -0.16
LIME1-209ENST00000494776 RNF13O43567 381 aa14.03□□□□□ -0.16
LIME1-209ENST00000494776 HPRP00739 348 aa14.03□□□□□ -0.16
LIME1-209ENST00000494776 ITGA5P08648 1049 aa14.03□□□□□ -0.16
LIME1-209ENST00000494776 HLA-DOBP13765 273 aa14.03□□□□□ -0.16
LIME1-209ENST00000494776 DNASE1P24855 282 aa14.03□□□□□ -0.16
LIME1-209ENST00000494776 MSX2P35548 267 aaPredicted RBP14.03□□□□□ -0.16
LIME1-209ENST00000494776 UGT2B15P54855 530 aa14.03□□□□□ -0.16
LIME1-209ENST00000494776 FOXG1P55316 489 aaPredicted RBP14.03□□□□□ -0.16
LIME1-209ENST00000494776 HMBOX1Q6NT76 420 aa14.03□□□□□ -0.16
LIME1-209ENST00000494776 SSX8Q7RTT4 187 aa14.03□□□□□ -0.16
LIME1-209ENST00000494776 NANOGNBQ7Z5D8 188 aa14.03□□□□□ -0.16
LIME1-209ENST00000494776 GPR137CQ8N3F9 429 aa14.03□□□□□ -0.16
LIME1-209ENST00000494776 LRRC17Q8N6Y2 441 aa14.03□□□□□ -0.16
LIME1-209ENST00000494776 OR52N5Q8NH56 324 aa14.03□□□□□ -0.16
LIME1-209ENST00000494776 PFN4Q8NHR9 129 aa14.03□□□□□ -0.16
LIME1-209ENST00000494776 SGTBQ96EQ0 304 aa14.03□□□□□ -0.16
LIME1-209ENST00000494776 LIME1Q9H400 295 aa14.03□□□□□ -0.16
LIME1-209ENST00000494776 ESRP2Q9H6T0 727 aaKnown RBP14.03□□□□□ -0.16
LIME1-209ENST00000494776 GORASP2Q9H8Y8 452 aa14.03□□□□□ -0.16
LIME1-209ENST00000494776 MEPEQ9NQ76 525 aaPredicted RBP14.03□□□□□ -0.16
LIME1-209ENST00000494776 DCAF13Q9NV06 445 aaKnown RBP14.03□□□□□ -0.16
LIME1-209ENST00000494776 CD300AQ9UGN4 299 aa14.03□□□□□ -0.16
LIME1-209ENST00000494776 ST6GALNAC2Q9UJ37 374 aa14.03□□□□□ -0.16
LIME1-209ENST00000494776 FREM1Q5H8C1 2179 aa14.02□□□□□ -0.16
LIME1-209ENST00000494776 BLOC1S5-TXNDC5H3BN57 136 aa14.02□□□□□ -0.17
LIME1-209ENST00000494776 PDLIM1O00151 329 aa14.02□□□□□ -0.17
LIME1-209ENST00000494776 FUT1P19526 365 aa14.02□□□□□ -0.17
LIME1-209ENST00000494776 LGALS3BPQ08380 585 aa14.02□□□□□ -0.17
LIME1-209ENST00000494776 KEAP1Q14145 624 aa14.02□□□□□ -0.17
LIME1-209ENST00000494776 TRAM2Q15035 370 aa14.02□□□□□ -0.17
LIME1-209ENST00000494776 GABRA6Q16445 453 aa14.02□□□□□ -0.17
LIME1-209ENST00000494776 SPATS1Q496A3 300 aa14.02□□□□□ -0.17
LIME1-209ENST00000494776 CARD17Q5XLA6 110 aa14.02□□□□□ -0.17
LIME1-209ENST00000494776 KLHL24Q6TFL4 600 aa14.02□□□□□ -0.17
LIME1-209ENST00000494776 PXKQ7Z7A4 578 aa14.02□□□□□ -0.17
LIME1-209ENST00000494776 OFCC1Q8IZS5 231 aa14.02□□□□□ -0.17
LIME1-209ENST00000494776 RBM15BQ8NDT2 890 aaKnown RBP14.02□□□□□ -0.17
LIME1-209ENST00000494776 PIK3C3Q8NEB9 887 aa14.02□□□□□ -0.17
LIME1-209ENST00000494776 NSMCE2Q96MF7 247 aa14.02□□□□□ -0.17
LIME1-209ENST00000494776 MUS81Q96NY9 551 aa14.02□□□□□ -0.17
LIME1-209ENST00000494776 ALKBH3Q96Q83 286 aaPredicted RBP14.02□□□□□ -0.17
LIME1-209ENST00000494776 HS3ST6Q96QI5 342 aa14.02□□□□□ -0.17
LIME1-209ENST00000494776 LINC00470Q9BZP3 86 aa14.02□□□□□ -0.17
LIME1-209ENST00000494776 PLEKHF2Q9H8W4 249 aa14.02□□□□□ -0.17
LIME1-209ENST00000494776 UBTD1Q9HAC8 227 aa14.02□□□□□ -0.17
LIME1-209ENST00000494776 MED29Q9NX70 200 aa14.02□□□□□ -0.17
LIME1-209ENST00000494776 PLEKHA6Q9Y2H5 1048 aa14.02□□□□□ -0.17
LIME1-209ENST00000494776 V9GYQ6 96 aa14.02□□□□□ -0.17
LIME1-209ENST00000494776 A0A1W2PR80 420 aa14.01□□□□□ -0.17
LIME1-209ENST00000494776 TRAF3IP2O43734 574 aaPredicted RBP14.01□□□□□ -0.17
LIME1-209ENST00000494776 UPK3AO75631 287 aa14.01□□□□□ -0.17
LIME1-209ENST00000494776 OR7A10O76100 309 aa14.01□□□□□ -0.17
LIME1-209ENST00000494776 ZNF432O94892 652 aa14.01□□□□□ -0.17
LIME1-209ENST00000494776 ASAH2BP0C7U1 165 aa14.01□□□□□ -0.17
LIME1-209ENST00000494776 ROR2Q01974 943 aaKnown RBP14.01□□□□□ -0.17
LIME1-209ENST00000494776 RINLQ6ZS11 566 aa14.01□□□□□ -0.17
LIME1-209ENST00000494776 RRM2BQ7LG56 351 aa14.01□□□□□ -0.17
LIME1-209ENST00000494776 TRPM8Q7Z2W7 1104 aa14.01□□□□□ -0.17
LIME1-209ENST00000494776 SLC46A3Q7Z3Q1 461 aa14.01□□□□□ -0.17
LIME1-209ENST00000494776 C17orf78Q8N4C9 275 aa14.01□□□□□ -0.17
LIME1-209ENST00000494776 C1orf162Q8NEQ5 155 aaPredicted RBP14.01□□□□□ -0.17
LIME1-209ENST00000494776 ANKK1Q8NFD2 765 aa14.01□□□□□ -0.17
LIME1-209ENST00000494776 MCUR1Q96AQ8 359 aa14.01□□□□□ -0.17
LIME1-209ENST00000494776 TXNDC15Q96J42 360 aa14.01□□□□□ -0.17
LIME1-209ENST00000494776 OR2M2Q96R28 347 aa14.01□□□□□ -0.17
LIME1-209ENST00000494776 EMC6Q9BV81 110 aa14.01□□□□□ -0.17
LIME1-209ENST00000494776 B3GAT2Q9NPZ5 323 aa14.01□□□□□ -0.17
LIME1-209ENST00000494776 C20orf141Q9NUB4 165 aa14.01□□□□□ -0.17
LIME1-209ENST00000494776 ENPP4Q9Y6X5 453 aa14.01□□□□□ -0.17
LIME1-209ENST00000494776 A0A1W2PPR1 153 aa14□□□□□ -0.17
LIME1-209ENST00000494776 SLC35F4A4IF30 521 aa14□□□□□ -0.17
LIME1-209ENST00000494776 hCG_2039718K7EN88 272 aa14□□□□□ -0.17
LIME1-209ENST00000494776 M0R3G1 203 aa14□□□□□ -0.17
LIME1-209ENST00000494776 ARPC2O15144 300 aa14□□□□□ -0.17
LIME1-209ENST00000494776 CLOCKO15516 846 aa14□□□□□ -0.17
LIME1-209ENST00000494776 PIP5K1CO60331 668 aa14□□□□□ -0.17
LIME1-209ENST00000494776 IGF2P01344 180 aa14□□□□□ -0.17
LIME1-209ENST00000494776 RAF1P04049 648 aa14□□□□□ -0.17
LIME1-209ENST00000494776 CD3EP07766 207 aa14□□□□□ -0.17
LIME1-209ENST00000494776 IFI30P13284 250 aa14□□□□□ -0.17
LIME1-209ENST00000494776 IFNGR1P15260 489 aa14□□□□□ -0.17
LIME1-209ENST00000494776 ZP4Q12836 540 aa14□□□□□ -0.17
LIME1-209ENST00000494776 CAMK2DQ13557 499 aa14□□□□□ -0.17
LIME1-209ENST00000494776 KLHL17Q6TDP4 642 aa14□□□□□ -0.17
LIME1-209ENST00000494776 PAMR1Q6UXH9 720 aa14□□□□□ -0.17
LIME1-209ENST00000494776 ZNF730Q6ZMV8 503 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms