RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 C20orf85Q9H1P6 137 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 DLL4Q9NR61 685 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 PNO1Q9NRX1 252 aaKnown RBP15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 C14orf105Q9NVL8 296 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 MYEF2Q9P2K5 600 aaKnown RBP15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 CDC14CA4D256 554 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 BLOC1S5-TXNDC5H3BN57 136 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 OR7A10O76100 309 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 DCTDP32321 178 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 GPR3P46089 330 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 OR1D4P47884 311 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 FOXL2P58012 376 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 CAMK2DQ13557 499 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 CD226Q15762 336 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 NLRC3Q7RTR2 1065 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 MOSPD2Q8NHP6 518 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 COQ8AQ8NI60 647 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 SLC38A3Q99624 504 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 JAM3Q9BX67 310 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 PRDM9Q9NQV7 894 aa15.09■□□□□ 0.01
CCDC88B-210ENST00000494566 CTNSO60931 367 aa15.08■□□□□ 0
CCDC88B-210ENST00000494566 MYF5P13349 255 aa15.08■□□□□ 0
CCDC88B-210ENST00000494566 GAS6Q14393 721 aa15.08■□□□□ 0
CCDC88B-210ENST00000494566 ALKAL2Q6UX46 152 aa15.08■□□□□ 0
CCDC88B-210ENST00000494566 ACOT12Q8WYK0 555 aa15.08■□□□□ 0
CCDC88B-210ENST00000494566 RBP7Q96R05 134 aa15.08■□□□□ 0
CCDC88B-210ENST00000494566 NRSN2Q9GZP1 204 aa15.08■□□□□ 0
CCDC88B-210ENST00000494566 ST6GALNAC1Q9NSC7 600 aaPredicted RBP15.08■□□□□ 0
CCDC88B-210ENST00000494566 MRPL39Q9NYK5 338 aaKnown RBP15.08■□□□□ 0
CCDC88B-210ENST00000494566 MGAT4CQ9UBM8 478 aa15.08■□□□□ 0
CCDC88B-210ENST00000494566 CHRNA9Q9UGM1 479 aa15.08■□□□□ 0
CCDC88B-210ENST00000494566 MED12Q93074 2177 aa15.08■□□□□ 0
CCDC88B-210ENST00000494566 ARHGDIBP52566 201 aa15.08■□□□□ 0
CCDC88B-210ENST00000494566 RPL13AP3Q6NVV1 102 aa15.08■□□□□ 0
CCDC88B-210ENST00000494566 ULK3Q6PHR2 472 aa15.08■□□□□ 0
CCDC88B-210ENST00000494566 ELMOD3Q96FG2 381 aa15.08■□□□□ 0
CCDC88B-210ENST00000494566 GPR137Q96N19 417 aa15.08■□□□□ 0
CCDC88B-210ENST00000494566 ELF5Q9UKW6 265 aaPredicted RBP15.08■□□□□ 0
CCDC88B-210ENST00000494566 GTF2A1LQ9UNN4 478 aa15.08■□□□□ 0
CCDC88B-210ENST00000494566 PCNX3Q9H6A9 2034 aa15.08■□□□□ 0
CCDC88B-210ENST00000494566 OR6C68A6NDL8 312 aa15.07■□□□□ 0
CCDC88B-210ENST00000494566 PLPP2O43688 288 aa15.07■□□□□ 0
CCDC88B-210ENST00000494566 BOLLQ8N9W6 283 aaKnown RBP15.07■□□□□ 0
CCDC88B-210ENST00000494566 GALNT11Q8NCW6 608 aa15.07■□□□□ 0
CCDC88B-210ENST00000494566 SGTBQ96EQ0 304 aa15.07■□□□□ 0
CCDC88B-210ENST00000494566 HSPA12BQ96MM6 686 aa15.07■□□□□ 0
CCDC88B-210ENST00000494566 MKKSQ9NPJ1 570 aaPredicted RBP15.07■□□□□ 0
CCDC88B-210ENST00000494566 TMEM131Q92545 1883 aa15.07■□□□□ 0
CCDC88B-210ENST00000494566 SERINC4A6NH21 518 aa15.07■□□□□ 0
CCDC88B-210ENST00000494566 TVP23AA6NH52 213 aa15.07■□□□□ 0
CCDC88B-210ENST00000494566 PRAMEF2O60811 474 aa15.07■□□□□ 0
CCDC88B-210ENST00000494566 NDUFB2O95178 105 aa15.07■□□□□ 0
CCDC88B-210ENST00000494566 MAS1P04201 325 aa15.07■□□□□ 0
CCDC88B-210ENST00000494566 ARHGAP11AQ6P4F7 1023 aa15.07■□□□□ 0
CCDC88B-210ENST00000494566 MED25Q71SY5 747 aa15.07■□□□□ 0
CCDC88B-210ENST00000494566 LIX1LQ8IVB5 337 aa15.07■□□□□ 0
CCDC88B-210ENST00000494566 MS4A15Q8N5U1 240 aa15.07■□□□□ 0
CCDC88B-210ENST00000494566 AHCYL2Q96HN2 611 aaKnown RBP15.07■□□□□ 0
CCDC88B-210ENST00000494566 MICU1Q9BPX6 476 aa15.07■□□□□ 0
CCDC88B-210ENST00000494566 DHCR7Q9UBM7 475 aaKnown RBP15.07■□□□□ 0
CCDC88B-210ENST00000494566 CA14Q9ULX7 337 aa15.07■□□□□ 0
CCDC88B-210ENST00000494566 PRR32B1ATL7 298 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 C17orf105B2RV13 164 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 CLDN4O14493 209 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 IFNGP01579 166 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 CAPZBP47756 277 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 OR5M10Q6IEU7 315 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 LSMEM1Q8N8F7 131 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 PHOSPHO1Q8TCT1 267 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 HOXB13Q92826 284 aaPredicted RBP15.06■□□□□ 0
CCDC88B-210ENST00000494566 TSLPQ969D9 159 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 C3orf49Q96BT1 292 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 NXPE2Q96DL1 559 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 OR1F2PQ96R84 312 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 OR8D2Q9GZM6 311 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 RANBP3Q9H6Z4 567 aaPredicted RBP15.06■□□□□ 0
CCDC88B-210ENST00000494566 B3GNT2Q9NY97 397 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 ST6GALNAC2Q9UJ37 374 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 MRPS33Q9Y291 106 aaKnown RBP15.06■□□□□ 0
CCDC88B-210ENST00000494566 NUBP2Q9Y5Y2 271 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 NPIPB9F8W1W9 429 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 H0YC42 278 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 M0R233 179 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 F13BP05160 661 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 OR8G3PP0DMU2 310 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 FNTBP49356 437 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 BDH1Q02338 343 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 HSD17B12Q53GQ0 312 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 TCTE1Q5JU00 501 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 LINC00114Q6XXX2 140 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 TTLL10Q6ZVT0 673 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 GRAMD2AQ8IUY3 354 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 OR8S1Q8NH09 359 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 C1orf216Q8TAB5 229 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 CXorf58Q96LI9 332 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 Q96M85 177 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 MOGAT1Q96PD6 335 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 DHRS9Q9BPW9 319 aa15.06■□□□□ 0
CCDC88B-210ENST00000494566 SRA1Q9HD15 236 aaKnown RBP15.06■□□□□ 0
CCDC88B-210ENST00000494566 POLE3Q9NRF9 147 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms