RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 FOXN4Q96NZ1 517 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 NEDD4LQ96PU5 975 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 CYTH2Q99418 400 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 TXN2Q99757 166 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 PRMT1Q99873 361 aaKnown RBP1.76□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF251Q9BRH9 671 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 NAT9Q9BTE0 207 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 RBM24Q9BX46 236 aaKnown RBP1.76□□□□□ -2.13
HMGB1-208ENST00000490788 ERVK-6Q9BXR3 956 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 SLC19A3Q9BZV2 496 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 DDX47Q9H0S4 455 aaKnown RBP1.76□□□□□ -2.13
HMGB1-208ENST00000490788 C2orf40Q9H1Z8 148 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 OR10A4Q9H209 315 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 PPA2Q9H2U2 334 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 PIGUQ9H490 435 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 GOLPH3Q9H4A6 298 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 DPEP2Q9H4A9 486 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 RMND5AQ9H871 391 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 JPT2Q9H910 190 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 ZFP14Q9HCL3 533 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 NIT2Q9NQR4 276 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 TUBG2Q9NRH3 451 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 PLSCR3Q9NRY6 295 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 STARD5Q9NSY2 213 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 FAM120CQ9NX05 1096 aaKnown RBP1.76□□□□□ -2.13
HMGB1-208ENST00000490788 SDHAF2Q9NX18 166 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 GPR83Q9NYM4 423 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 ERVK-18Q9QC07 812 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 CTSZQ9UBR2 303 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 KLK11Q9UBX7 282 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 MAD2L2Q9UI95 211 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF221Q9UK13 617 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 PILRBQ9UKJ0 227 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 CDH7Q9ULB5 785 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 TP53TG3Q9ULZ0 132 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 GUCA1BQ9UMX6 200 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 SCML1Q9UN30 329 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 RPH3ALQ9UNE2 315 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 NSG2Q9Y328 171 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 MFHAS1Q9Y4C4 1052 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 CCL27Q9Y4X3 112 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 AUP1Q9Y679 476 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 AHCTF1Q8WYP5 2266 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 UTP20O75691 2785 aaKnown RBP1.76□□□□□ -2.13
HMGB1-208ENST00000490788 CABIN1Q9Y6J0 2220 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 USP9YO00507 2555 aaPredicted RBP1.76□□□□□ -2.13
HMGB1-208ENST00000490788 OTOGQ6ZRI0 2925 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 LRBAP50851 2863 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 FLNCQ14315 2725 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 ITPR2Q14571 2701 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF236Q9UL36 1845 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 MED13LQ71F56 2210 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 IGLV3-10A0A075B6K4 115 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 IGLV4-3A0A075B6K6 122 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 TRAV18A0A075B6X5 111 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 A0A1B0GVY2 172 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 GNG14A0A1W2PPG7 69 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 PQLC2LA1A4F0 135 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 ISPDA4D126 451 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 OR6C70A6NIJ9 312 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 ANXA2P2A6NMY6 339 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 HACD1B0YJ81 288 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 LOC110117498-PIK3R3F6TDL0 507 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 H3BMM5 538 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 I3L521 148 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 DDX39AO00148 427 aaKnown RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 ZBTB5O15062 677 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 INPP4BO15327 924 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 TOX3O15405 576 aaPredicted RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 MAGEB2O15479 319 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 GYG2O15488 501 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 RGS5O15539 181 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 DENRO43583 198 aaKnown RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 JAK2O60674 1132 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF780AO75290 641 aaPredicted RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 FKBP6O75344 327 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 SAP30O75446 220 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 LYPLA1O75608 230 aaPredicted RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 CIB2O75838 187 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 AKAP3O75969 853 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 TNFAIP8O95379 198 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 NSA2O95478 260 aaKnown RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 LDOC1O95751 146 aaPredicted RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 SLC25A27O95847 323 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 MOCS2O96007 188 aaPredicted RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 TNNC2P02585 160 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 GYPCP04921 128 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 FHP07954 510 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 HCKP08631 526 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 RBP1P09455 135 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 FBP1P09467 338 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 CD3GP09693 182 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 OR4E1P0C645 316 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 FAM58BPP0C7Q3 252 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 STAG3L3P0CL85 134 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 RALAP11233 206 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 ADRB3P13945 408 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 NCF1P14598 390 aaPredicted RBP1.75□□□□□ -2.13
HMGB1-208ENST00000490788 SPNP16150 400 aa1.75□□□□□ -2.13
HMGB1-208ENST00000490788 CD36P16671 472 aa1.75□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms