RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 SYT11Q9BT88 431 aa2.66□□□□□ -1.98
DEPDC1-204ENST00000489862 TM6SF2Q9BZW4 377 aa2.66□□□□□ -1.98
DEPDC1-204ENST00000489862 CPVLQ9H3G5 476 aa2.66□□□□□ -1.98
DEPDC1-204ENST00000489862 GOLPH3Q9H4A6 298 aa2.66□□□□□ -1.98
DEPDC1-204ENST00000489862 RETNQ9HD89 108 aa2.66□□□□□ -1.98
DEPDC1-204ENST00000489862 SCRT2Q9NQ03 307 aa2.66□□□□□ -1.98
DEPDC1-204ENST00000489862 LYARQ9NX58 379 aaKnown RBP2.66□□□□□ -1.98
DEPDC1-204ENST00000489862 UXTQ9UBK9 157 aaPredicted RBP2.66□□□□□ -1.98
DEPDC1-204ENST00000489862 TUBGCP4Q9UGJ1 667 aa2.66□□□□□ -1.98
DEPDC1-204ENST00000489862 HMGXB4Q9UGU5 601 aa2.66□□□□□ -1.98
DEPDC1-204ENST00000489862 DCDC2Q9UHG0 476 aa2.66□□□□□ -1.98
DEPDC1-204ENST00000489862 CLEC2DQ9UHP7 191 aa2.66□□□□□ -1.98
DEPDC1-204ENST00000489862 IKZF2Q9UKS7 526 aa2.66□□□□□ -1.98
DEPDC1-204ENST00000489862 SCML2Q9UQR0 700 aa2.66□□□□□ -1.98
DEPDC1-204ENST00000489862 EXOSC1Q9Y3B2 195 aaKnown RBP2.66□□□□□ -1.98
DEPDC1-204ENST00000489862 WIPI2Q9Y4P8 454 aa2.66□□□□□ -1.98
DEPDC1-204ENST00000489862 FER1L6Q2WGJ9 1857 aa2.66□□□□□ -1.98
DEPDC1-204ENST00000489862 LTBP1Q14766 1721 aa2.66□□□□□ -1.98
DEPDC1-204ENST00000489862 CACNA1FO60840 1977 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 ARFGEF1Q9Y6D6 1849 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 KCNE1BA0A087WTH5 132 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 A0A1B0GW15 77 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 FAM172BPA6NC97 362 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 NPIPA7E9PJI5 369 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 C16orf97H3BN30 126 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 FCN1O00602 326 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 CFLARO15519 480 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 N4BP1O75113 896 aaKnown RBP2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 DUSP11O75319 330 aaKnown RBP2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 ADAP1O75689 374 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 CDK2AP2O75956 126 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 FGF19O95750 216 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 NGFP01138 241 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 TSHBP01222 138 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 NPIPA8P0DM63 369 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 PRKAR1AP10644 381 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 FOSL2P15408 326 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 MARK3P27448 753 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 GABRR2P28476 465 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 SAA4P35542 130 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 CRATP43155 626 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 MAGEA9P43362 315 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 XCR1P46094 333 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 CSNK1A1P48729 337 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 IST1P53990 364 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 PSMD4P55036 377 aaKnown RBP2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 MLLT10P55197 1068 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 OSTNP61366 133 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 ATP6V0D1P61421 351 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 YWHAGP61981 247 aaKnown RBP eCLIP2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 RPS15AP62244 130 aaKnown RBP2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 RPS6P62753 249 aaKnown RBP2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 RPL8P62917 257 aaKnown RBP2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 NTHL1P78549 312 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 MYL7Q01449 175 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 PLOD1Q02809 727 aaPredicted RBP2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 ZNF33BQ06732 778 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 GRB7Q14451 532 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 SGSM1Q2NKQ1 1148 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 SNAI3Q3KNW1 292 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 GLYR1Q49A26 553 aaPredicted RBP2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 FAM106AQ4KMX7 169 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 CDKL4Q5MAI5 379 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 ATP1A1-AS1Q5TC04 95 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 GPR107Q5VW38 600 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 CLEC6AQ6EIG7 209 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 TRNP1Q6NT89 227 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 REEP3Q6NUK4 255 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 TMIGD1Q6UXZ0 262 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 FCRLAQ7L513 359 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 SLC26A9Q7LBE3 791 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 SSX9Q7RTT3 188 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 SLC16A14Q7RTX9 510 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 ABHD12BQ7Z5M8 362 aaPredicted RBP2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 SLC47A2Q86VL8 602 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 SLC35F2Q8IXU6 374 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 ST13P4Q8IZP2 240 aaPredicted RBP2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 TRAM1L1Q8N609 369 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 CCDC185Q8N715 623 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 C8orf31Q8N9H6 132 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 ZNRF1Q8ND25 227 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 MDS2Q8NDY4 140 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 TRPV1Q8NER1 839 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 OR2T33Q8NG76 320 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 OR52H1Q8NGJ2 320 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 OR4A4PQ8NGN8 299 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 OR13A1Q8NGR1 328 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 TBCKQ8TEA7 893 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 SMAP2Q8WU79 429 aaPredicted RBP2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 TFGQ92734 400 aaPredicted RBP2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 FAF2Q96CS3 445 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 DNAJA3Q96EY1 480 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 LURAP1Q96LR2 239 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 ATP5SQ99766 215 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 MAPKAP1Q9BPZ7 522 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 BICC1Q9H694 974 aaKnown RBP2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 ATP13A3Q9H7F0 1226 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 PLEKHA3Q9HB20 300 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 ADAP2Q9NPF8 381 aa2.65□□□□□ -1.98
DEPDC1-204ENST00000489862 DYRK4Q9NR20 520 aa2.65□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms