RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 OXGR1Q96P68 337 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 RNF2Q99496 336 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 TSG101Q99816 390 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 CCT7Q99832 543 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 ROPN1BQ9BZX4 212 aaPredicted RBP1.52□□□□□ -2.17
CPSF3-205ENST00000489629 POLR2J2Q9GZM3 115 aaKnown RBP1.52□□□□□ -2.17
CPSF3-205ENST00000489629 POLR2J3Q9H1A7 115 aaKnown RBP1.52□□□□□ -2.17
CPSF3-205ENST00000489629 RBKSQ9H477 322 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 LRRC40Q9H9A6 602 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 NHEJ1Q9H9Q4 299 aaPredicted RBP1.52□□□□□ -2.17
CPSF3-205ENST00000489629 FN3KRPQ9HA64 309 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 AIG1Q9NVV5 245 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 RPL36Q9Y3U8 105 aaKnown RBP1.52□□□□□ -2.17
CPSF3-205ENST00000489629 PLEKHH1Q9ULM0 1364 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 IGHV3-64DA0A0J9YX35 117 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 A0A1B0GVL5 298 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 A0A1W2PPE3 182 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 TCRBV9S1A1TA0A576 114 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 XKRY2A2RUG3 117 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 TMEM150BA6NC51 233 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 E9PBE3 544 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 LOC110117498-PIK3R3F6TDL0 507 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 HIP1O00291 1037 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 MBTPS2O43462 519 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 MED7O43513 233 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 TIMM8AO60220 97 aaPredicted RBP1.51□□□□□ -2.17
CPSF3-205ENST00000489629 TSPAN12O95859 305 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 CCDC130P13994 396 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 COX7A1P24310 79 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 CXCR2P25025 360 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 GNA11P29992 359 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 PRDX3P30048 256 aaKnown RBP1.51□□□□□ -2.17
CPSF3-205ENST00000489629 RDXP35241 583 aaKnown RBP1.51□□□□□ -2.17
CPSF3-205ENST00000489629 CSNK1DP48730 415 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 CEBPDP49716 269 aaPredicted RBP1.51□□□□□ -2.17
CPSF3-205ENST00000489629 CCR6P51684 374 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 KPNA2P52292 529 aaKnown RBP1.51□□□□□ -2.17
CPSF3-205ENST00000489629 SELENOTP62341 195 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 CDK16Q00536 496 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 TGFBR3Q03167 851 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 NCBP1Q09161 790 aaKnown RBP1.51□□□□□ -2.17
CPSF3-205ENST00000489629 LRRC74AQ0VAA2 488 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 ARFRP1Q13795 201 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 OXA1LQ15070 435 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 ZMYND11Q15326 602 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 NSDHLQ15738 373 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 KCTD21Q4G0X4 260 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 DMRTC1Q5HYR2 192 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 SAMD4BQ5PRF9 694 aaKnown RBP1.51□□□□□ -2.17
CPSF3-205ENST00000489629 TIGD3Q6B0B8 471 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 OR2A2Q6IF42 318 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 HSDL2Q6YN16 418 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 PGAP1Q75T13 922 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 TRIM69Q86WT6 500 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 SLC22A9Q8IVM8 553 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 CCDC65Q8IXS2 484 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 TRPV1Q8NER1 839 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 SDR9C7Q8NEX9 313 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 OR10G3Q8NGC4 313 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 OR52H1Q8NGJ2 320 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 OR1L4Q8NGR5 311 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 AKR7LQ8NHP1 331 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 UFD1Q92890 307 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 UCN3Q969E3 161 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 C10orf35Q96D05 121 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 CMTM7Q96FZ5 175 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 ITCHQ96J02 903 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 FAM210BQ96KR6 192 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 RBM14Q96PK6 669 aaKnown RBP1.51□□□□□ -2.17
CPSF3-205ENST00000489629 COPS8Q99627 209 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 P2RY13Q9BPV8 354 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 MRPL45Q9BRJ2 306 aaKnown RBP1.51□□□□□ -2.17
CPSF3-205ENST00000489629 TRIM62Q9BVG3 475 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 PLA2G2FQ9BZM2 168 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 SLC25A22Q9H936 323 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 MCCC2Q9HCC0 563 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 POLE4Q9NR33 117 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 THUMPD1Q9NXG2 353 aaKnown RBP1.51□□□□□ -2.17
CPSF3-205ENST00000489629 RBAKQ9NYW8 714 aaPredicted RBP1.51□□□□□ -2.17
CPSF3-205ENST00000489629 COX16Q9P0S2 106 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 PISDQ9UG56 409 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 ZNF639Q9UID6 485 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 TBX21Q9UL17 535 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 ASF1AQ9Y294 204 aa1.51□□□□□ -2.17
CPSF3-205ENST00000489629 NSG1A0A0A6YYJ2 146 aa1.5□□□□□ -2.17
CPSF3-205ENST00000489629 A0A0G2JLM5 398 aa1.5□□□□□ -2.17
CPSF3-205ENST00000489629 IQANK1A0A1B0GTG1 560 aa1.5□□□□□ -2.17
CPSF3-205ENST00000489629 A0A1W2PPV9 198 aa1.5□□□□□ -2.17
CPSF3-205ENST00000489629 OR2AG2A6NM03 316 aa1.5□□□□□ -2.17
CPSF3-205ENST00000489629 OR52A4PA6NMU1 304 aa1.5□□□□□ -2.17
CPSF3-205ENST00000489629 A8MXQ7 604 aa1.5□□□□□ -2.17
CPSF3-205ENST00000489629 HSD17B6O14756 317 aa1.5□□□□□ -2.17
CPSF3-205ENST00000489629 AGPAT2O15120 278 aa1.5□□□□□ -2.17
CPSF3-205ENST00000489629 FAM189A1O60320 539 aa1.5□□□□□ -2.17
CPSF3-205ENST00000489629 MED6O75586 246 aa1.5□□□□□ -2.17
CPSF3-205ENST00000489629 CLDN9O95484 217 aa1.5□□□□□ -2.17
CPSF3-205ENST00000489629 OXSR1O95747 527 aaPredicted RBP1.5□□□□□ -2.17
CPSF3-205ENST00000489629 IGLV3-19P01714 112 aa1.5□□□□□ -2.17
CPSF3-205ENST00000489629 CT62P0C5K7 136 aa1.5□□□□□ -2.17
CPSF3-205ENST00000489629 CHTF8P0CG12 524 aa1.5□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms