RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 HRGP04196 525 aa13.01□□□□□ -0.33
USP4-212ENST00000486549 THRBP10828 461 aa13.01□□□□□ -0.33
USP4-212ENST00000486549 HLA-DOBP13765 273 aa13.01□□□□□ -0.33
USP4-212ENST00000486549 COX5AP20674 150 aa13.01□□□□□ -0.33
USP4-212ENST00000486549 LGALS3BPQ08380 585 aa13.01□□□□□ -0.33
USP4-212ENST00000486549 PUDPQ08623 228 aa13.01□□□□□ -0.33
USP4-212ENST00000486549 TAB1Q15750 504 aa13.01□□□□□ -0.33
USP4-212ENST00000486549 FXNQ16595 210 aa13.01□□□□□ -0.33
USP4-212ENST00000486549 SLC46A3Q7Z3Q1 461 aa13.01□□□□□ -0.33
USP4-212ENST00000486549 NANOGNBQ7Z5D8 188 aa13.01□□□□□ -0.33
USP4-212ENST00000486549 CYP4Z1Q86W10 505 aa13.01□□□□□ -0.33
USP4-212ENST00000486549 CDC20BQ86Y33 519 aa13.01□□□□□ -0.33
USP4-212ENST00000486549 OFCC1Q8IZS5 231 aa13.01□□□□□ -0.33
USP4-212ENST00000486549 SGTBQ96EQ0 304 aa13.01□□□□□ -0.33
USP4-212ENST00000486549 HS6ST2Q96MM7 605 aa13.01□□□□□ -0.33
USP4-212ENST00000486549 ALKBH3Q96Q83 286 aaPredicted RBP13.01□□□□□ -0.33
USP4-212ENST00000486549 OR10A4Q9H209 315 aa13.01□□□□□ -0.33
USP4-212ENST00000486549 GORASP2Q9H8Y8 452 aa13.01□□□□□ -0.33
USP4-212ENST00000486549 C20orf141Q9NUB4 165 aa13.01□□□□□ -0.33
USP4-212ENST00000486549 TAS2R16Q9NYV7 291 aa13.01□□□□□ -0.33
USP4-212ENST00000486549 ZNF229Q9UJW7 825 aa13.01□□□□□ -0.33
USP4-212ENST00000486549 DEFB108AA8MXU0 73 aa13□□□□□ -0.33
USP4-212ENST00000486549 FFAR1O14842 300 aa13□□□□□ -0.33
USP4-212ENST00000486549 TRAF3IP2O43734 574 aaPredicted RBP13□□□□□ -0.33
USP4-212ENST00000486549 AKAP8O43823 692 aaKnown RBP13□□□□□ -0.33
USP4-212ENST00000486549 HIST1H2ABP04908 130 aa13□□□□□ -0.33
USP4-212ENST00000486549 ITGA5P08648 1049 aa13□□□□□ -0.33
USP4-212ENST00000486549 CDH2P19022 906 aaPredicted RBP13□□□□□ -0.33
USP4-212ENST00000486549 TRAM2Q15035 370 aa13□□□□□ -0.33
USP4-212ENST00000486549 SPATS1Q496A3 300 aa13□□□□□ -0.33
USP4-212ENST00000486549 CARD17Q5XLA6 110 aa13□□□□□ -0.33
USP4-212ENST00000486549 CYP2R1Q6VVX0 501 aa13□□□□□ -0.33
USP4-212ENST00000486549 SPNS3Q6ZMD2 512 aa13□□□□□ -0.33
USP4-212ENST00000486549 HIST3H2AQ7L7L0 130 aa13□□□□□ -0.33
USP4-212ENST00000486549 POMGNT2Q8NAT1 580 aa13□□□□□ -0.33
USP4-212ENST00000486549 HIST1H2ACQ93077 130 aa13□□□□□ -0.33
USP4-212ENST00000486549 EMC6Q9BV81 110 aa13□□□□□ -0.33
USP4-212ENST00000486549 MAN2C1Q9NTJ4 1040 aa13□□□□□ -0.33
USP4-212ENST00000486549 MED29Q9NX70 200 aa13□□□□□ -0.33
USP4-212ENST00000486549 RCE1Q9Y256 329 aa13□□□□□ -0.33
USP4-212ENST00000486549 FAM32AQ9Y421 112 aaKnown RBP13□□□□□ -0.33
USP4-212ENST00000486549 NOX1Q9Y5S8 564 aa13□□□□□ -0.33
USP4-212ENST00000486549 ENPP4Q9Y6X5 453 aa13□□□□□ -0.33
USP4-212ENST00000486549 PDZD2O15018 2839 aa13□□□□□ -0.33
USP4-212ENST00000486549 AKAP6Q13023 2319 aa13□□□□□ -0.33
USP4-212ENST00000486549 OTOGQ6ZRI0 2925 aa12.99□□□□□ -0.33
USP4-212ENST00000486549 SPG11Q96JI7 2443 aa12.99□□□□□ -0.33
USP4-212ENST00000486549 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.99□□□□□ -0.33
USP4-212ENST00000486549 A0A1W2PR80 420 aa12.99□□□□□ -0.33
USP4-212ENST00000486549 ZNF587BE7ETH6 402 aa12.99□□□□□ -0.33
USP4-212ENST00000486549 RNF13O43567 381 aa12.99□□□□□ -0.33
USP4-212ENST00000486549 SLC43A1O75387 559 aa12.99□□□□□ -0.33
USP4-212ENST00000486549 UPK3AO75631 287 aa12.99□□□□□ -0.33
USP4-212ENST00000486549 OR7A10O76100 309 aa12.99□□□□□ -0.33
USP4-212ENST00000486549 DIRAS1O95057 198 aa12.99□□□□□ -0.33
USP4-212ENST00000486549 ASAH2BP0C7U1 165 aa12.99□□□□□ -0.33
USP4-212ENST00000486549 IFI30P13284 250 aa12.99□□□□□ -0.33
USP4-212ENST00000486549 FUT1P19526 365 aa12.99□□□□□ -0.33
USP4-212ENST00000486549 ATP6V1B2P21281 511 aa12.99□□□□□ -0.33
USP4-212ENST00000486549 LSM11P83369 360 aaKnown RBP eCLIP12.99□□□□□ -0.33
USP4-212ENST00000486549 TSEN54Q7Z6J9 526 aaKnown RBP12.99□□□□□ -0.33
USP4-212ENST00000486549 MEX3DQ86XN8 651 aaKnown RBP12.99□□□□□ -0.33
USP4-212ENST00000486549 HSD17B8Q92506 261 aa12.99□□□□□ -0.33
USP4-212ENST00000486549 PYURFQ96I23 114 aa12.99□□□□□ -0.33
USP4-212ENST00000486549 TXNDC15Q96J42 360 aa12.99□□□□□ -0.33
USP4-212ENST00000486549 CSMD1Q96PZ7 3565 aa12.99□□□□□ -0.33
USP4-212ENST00000486549 LOC102725191A0A1B0GVB3 256 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 A0A1W2PPR1 153 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 BLOC1S5-TXNDC5H3BN57 136 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 PDLIM1O00151 329 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 KLF4O43474 513 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 ZNF432O94892 652 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 PRSS23O95084 383 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 MPGP29372 298 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 VLDLRP98155 873 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 PPA1Q15181 289 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 GABRA6Q16445 453 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 BEX5Q5H9J7 111 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 FGD3Q5JSP0 725 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 ZNF730Q6ZMV8 503 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 LINGO2Q7L985 606 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 ABHD12BQ7Z5M8 362 aaPredicted RBP12.98□□□□□ -0.33
USP4-212ENST00000486549 PXKQ7Z7A4 578 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 NRMQ8IXM6 262 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 ARHGAP24Q8N264 748 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 GPR137CQ8N3F9 429 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 ANKK1Q8NFD2 765 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 OR52N5Q8NH56 324 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 CCDC124Q96CT7 223 aaKnown RBP12.98□□□□□ -0.33
USP4-212ENST00000486549 PLPPR2Q96GM1 343 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 CLPTM1LQ96KA5 538 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 HS3ST6Q96QI5 342 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 OR2M2Q96R28 347 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 LIME1Q9H400 295 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 TAS2R5Q9NYW4 299 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 TAS2R1Q9NYW7 299 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 NDUFAF4Q9P032 175 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 PRPF19Q9UMS4 504 aaKnown RBP12.98□□□□□ -0.33
USP4-212ENST00000486549 CSMD2Q7Z408 3487 aa12.98□□□□□ -0.33
USP4-212ENST00000486549 SLC35F4A4IF30 521 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms