RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 ZNF16P17020 682 aaPredicted RBP18.74■□□□□ 0.59
USP40-215ENST00000484528 PPIBP23284 216 aaKnown RBP18.74■□□□□ 0.59
USP40-215ENST00000484528 IDH3GP51553 393 aaPredicted RBP18.74■□□□□ 0.59
USP40-215ENST00000484528 SH3BGRP55822 239 aaPredicted RBP18.74■□□□□ 0.59
USP40-215ENST00000484528 CARTPTQ16568 116 aa18.74■□□□□ 0.59
USP40-215ENST00000484528 CEACAM16Q2WEN9 425 aa18.74■□□□□ 0.59
USP40-215ENST00000484528 CHRFAM7AQ494W8 412 aa18.74■□□□□ 0.59
USP40-215ENST00000484528 TTMPQ5BVD1 217 aa18.74■□□□□ 0.59
USP40-215ENST00000484528 CARD17Q5XLA6 110 aa18.74■□□□□ 0.59
USP40-215ENST00000484528 SLC46A3Q7Z3Q1 461 aa18.74■□□□□ 0.59
USP40-215ENST00000484528 MAGEE2Q8TD90 523 aaPredicted RBP18.74■□□□□ 0.59
USP40-215ENST00000484528 DNAJA4Q8WW22 397 aaPredicted RBP18.74■□□□□ 0.59
USP40-215ENST00000484528 DYDC1Q8WWB3 177 aa18.74■□□□□ 0.59
USP40-215ENST00000484528 THOC1Q96FV9 657 aaKnown RBP18.74■□□□□ 0.59
USP40-215ENST00000484528 ATP6V1G3Q96LB4 118 aa18.74■□□□□ 0.59
USP40-215ENST00000484528 OR2M2Q96R28 347 aa18.74■□□□□ 0.59
USP40-215ENST00000484528 VRK1Q99986 396 aaPredicted RBP18.74■□□□□ 0.59
USP40-215ENST00000484528 CRNNQ9UBG3 495 aaPredicted RBP18.74■□□□□ 0.59
USP40-215ENST00000484528 ZNF503-AS2A6NEH8 195 aa18.73■□□□□ 0.59
USP40-215ENST00000484528 F12P00748 615 aaPredicted RBP18.73■□□□□ 0.59
USP40-215ENST00000484528 CSF3P09919 207 aa18.73■□□□□ 0.59
USP40-215ENST00000484528 OR4A8P0C604 315 aa18.73■□□□□ 0.59
USP40-215ENST00000484528 NQO1P15559 274 aaKnown RBP18.73■□□□□ 0.59
USP40-215ENST00000484528 SLC6A2P23975 617 aa18.73■□□□□ 0.59
USP40-215ENST00000484528 SERPINF1P36955 418 aa18.73■□□□□ 0.59
USP40-215ENST00000484528 VLDLRP98155 873 aa18.73■□□□□ 0.59
USP40-215ENST00000484528 PHYHD1Q5SRE7 291 aa18.73■□□□□ 0.59
USP40-215ENST00000484528 ULK3Q6PHR2 472 aa18.73■□□□□ 0.59
USP40-215ENST00000484528 C5orf46Q6UWT4 87 aa18.73■□□□□ 0.59
USP40-215ENST00000484528 H1FNTQ75WM6 255 aaPredicted RBP18.73■□□□□ 0.59
USP40-215ENST00000484528 SLC47A1Q96FL8 570 aa18.73■□□□□ 0.59
USP40-215ENST00000484528 ZNF317Q96PQ6 595 aaPredicted RBP18.73■□□□□ 0.59
USP40-215ENST00000484528 CPPED1Q9BRF8 314 aaPredicted RBP18.73■□□□□ 0.59
USP40-215ENST00000484528 CRLF2Q9HC73 371 aa18.73■□□□□ 0.59
USP40-215ENST00000484528 TESQ9UGI8 421 aaKnown RBP18.73■□□□□ 0.59
USP40-215ENST00000484528 SLC13A4Q9UKG4 626 aa18.73■□□□□ 0.59
USP40-215ENST00000484528 FKBP7Q9Y680 259 aa18.73■□□□□ 0.59
USP40-215ENST00000484528 EVPLLA8MZ36 301 aa18.72■□□□□ 0.59
USP40-215ENST00000484528 LRRN3E7EW58 273 aa18.72■□□□□ 0.59
USP40-215ENST00000484528 RPL36A-HNRNPH2H7BZ11 118 aa18.72■□□□□ 0.59
USP40-215ENST00000484528 M0R3G1 203 aa18.72■□□□□ 0.59
USP40-215ENST00000484528 IGLV1-44P01699 117 aa18.72■□□□□ 0.59
USP40-215ENST00000484528 HLA-DOBP13765 273 aa18.72■□□□□ 0.59
USP40-215ENST00000484528 CAPZA2P47755 286 aa18.72■□□□□ 0.59
USP40-215ENST00000484528 NPRL3Q12980 569 aa18.72■□□□□ 0.59
USP40-215ENST00000484528 GGTLC2Q14390 218 aa18.72■□□□□ 0.59
USP40-215ENST00000484528 SQLEQ14534 574 aa18.72■□□□□ 0.59
USP40-215ENST00000484528 OR1Q1Q15612 314 aa18.72■□□□□ 0.59
USP40-215ENST00000484528 ADIPOQQ15848 244 aa18.72■□□□□ 0.59
USP40-215ENST00000484528 ADRM1Q16186 407 aa18.72■□□□□ 0.59
USP40-215ENST00000484528 ARMC8Q8IUR7 673 aa18.72■□□□□ 0.59
USP40-215ENST00000484528 UEVLDQ8IX04 471 aa18.72■□□□□ 0.59
USP40-215ENST00000484528 TMEM123Q8N131 208 aa18.72■□□□□ 0.59
USP40-215ENST00000484528 ZNF607Q96SK3 696 aa18.72■□□□□ 0.59
USP40-215ENST00000484528 EMC6Q9BV81 110 aa18.72■□□□□ 0.59
USP40-215ENST00000484528 TMEM38AQ9H6F2 299 aa18.72■□□□□ 0.59
USP40-215ENST00000484528 TMEM27Q9HBJ8 222 aa18.72■□□□□ 0.59
USP40-215ENST00000484528 SELENONQ9NZV5 590 aa18.72■□□□□ 0.59
USP40-215ENST00000484528 FBN3Q75N90 2809 aa18.72■□□□□ 0.59
USP40-215ENST00000484528 A0A0B4J2E0 115 aa18.71■□□□□ 0.59
USP40-215ENST00000484528 A0A1B0GX12 115 aa18.71■□□□□ 0.59
USP40-215ENST00000484528 PRORSD1PA6NEY8 169 aa18.71■□□□□ 0.59
USP40-215ENST00000484528 AKAP8O43823 692 aaKnown RBP18.71■□□□□ 0.59
USP40-215ENST00000484528 TPST2O60704 377 aa18.71■□□□□ 0.59
USP40-215ENST00000484528 IGKV3-15P01624 115 aa18.71■□□□□ 0.59
USP40-215ENST00000484528 BGLAPP02818 100 aa18.71■□□□□ 0.59
USP40-215ENST00000484528 IGHV4-31P0DP07 118 aa18.71■□□□□ 0.59
USP40-215ENST00000484528 GPX2P18283 190 aa18.71■□□□□ 0.59
USP40-215ENST00000484528 USF1P22415 310 aaPredicted RBP18.71■□□□□ 0.59
USP40-215ENST00000484528 PDLIM4P50479 330 aa18.71■□□□□ 0.59
USP40-215ENST00000484528 ATP4BP51164 291 aa18.71■□□□□ 0.59
USP40-215ENST00000484528 POU3F1Q03052 451 aaPredicted RBP18.71■□□□□ 0.59
USP40-215ENST00000484528 HGFACQ04756 655 aa18.71■□□□□ 0.59
USP40-215ENST00000484528 FAM91A1Q658Y4 838 aa18.71■□□□□ 0.59
USP40-215ENST00000484528 DLEU7Q6UYE1 221 aa18.71■□□□□ 0.59
USP40-215ENST00000484528 C10orf53Q8N6V4 93 aa18.71■□□□□ 0.59
USP40-215ENST00000484528 SMYD1Q8NB12 490 aa18.71■□□□□ 0.59
USP40-215ENST00000484528 HIPK4Q8NE63 616 aa18.71■□□□□ 0.59
USP40-215ENST00000484528 PIK3C3Q8NEB9 887 aa18.71■□□□□ 0.59
USP40-215ENST00000484528 PROX1Q92786 737 aa18.71■□□□□ 0.59
USP40-215ENST00000484528 MOGAT1Q96PD6 335 aa18.71■□□□□ 0.59
USP40-215ENST00000484528 KCNK17Q96T54 332 aa18.71■□□□□ 0.59
USP40-215ENST00000484528 CORO2BQ9UQ03 480 aa18.71■□□□□ 0.59
USP40-215ENST00000484528 GMEB1Q9Y692 573 aa18.71■□□□□ 0.59
USP40-215ENST00000484528 CUBNO60494 3623 aa18.7■□□□□ 0.58
USP40-215ENST00000484528 A0A087WUJ7 227 aa18.7■□□□□ 0.58
USP40-215ENST00000484528 B9A039 149 aa18.7■□□□□ 0.58
USP40-215ENST00000484528 MS4A18H0YCH9 400 aa18.7■□□□□ 0.58
USP40-215ENST00000484528 M0R3H8 397 aa18.7■□□□□ 0.58
USP40-215ENST00000484528 SERPINI2O75830 405 aa18.7■□□□□ 0.58
USP40-215ENST00000484528 OPN1SWP03999 348 aa18.7■□□□□ 0.58
USP40-215ENST00000484528 CDH12P55289 794 aa18.7■□□□□ 0.58
USP40-215ENST00000484528 SELPLGQ14242 412 aa18.7■□□□□ 0.58
USP40-215ENST00000484528 MS4A18Q3C1V0 323 aa18.7■□□□□ 0.58
USP40-215ENST00000484528 PODNL1Q6PEZ8 512 aa18.7■□□□□ 0.58
USP40-215ENST00000484528 NET1Q7Z628 596 aaPredicted RBP18.7■□□□□ 0.58
USP40-215ENST00000484528 DHDDSQ86SQ9 333 aa18.7■□□□□ 0.58
USP40-215ENST00000484528 MDP1Q86V88 176 aa18.7■□□□□ 0.58
USP40-215ENST00000484528 WDFY1Q8IWB7 410 aa18.7■□□□□ 0.58
USP40-215ENST00000484528 ADPRHL1Q8NDY3 354 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms