RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 TMEM52BQ4KMG9 183 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 CCDC157Q569K6 752 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 DCST2Q5T1A1 773 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 OR51L1Q8NGJ5 315 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 RPS4Y2Q8TD47 263 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 GRHL3Q8TE85 626 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 MTFP1Q9UDX5 166 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 WNT6Q9Y6F9 365 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 A0A0D9SG52 128 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 HOXB1P14653 301 aaPredicted RBP12.17□□□□□ -0.46
USP40-214ENST00000483519 HIST1H1CP16403 213 aaKnown RBP12.17□□□□□ -0.46
USP40-214ENST00000483519 BTN3A2P78410 334 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 DND1Q8IYX4 353 aaKnown RBP12.17□□□□□ -0.46
USP40-214ENST00000483519 C10orf90Q96M02 699 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 REPIN1Q9BWE0 567 aaKnown RBP12.17□□□□□ -0.46
USP40-214ENST00000483519 FANCFQ9NPI8 374 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 ACTR10Q9NZ32 417 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 CHRNA9Q9UGM1 479 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 APOBEC3BQ9UH17 382 aaKnown RBP12.17□□□□□ -0.46
USP40-214ENST00000483519 CCL16O15467 120 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 FGF18O76093 207 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 LINC00271P0C7V0 271 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 EPCAMP16422 314 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 MST1P26927 711 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 ITPKBP27987 946 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 DIO1P49895 249 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 SCAND1P57086 179 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 UBE2MP61081 183 aaKnown RBP12.17□□□□□ -0.46
USP40-214ENST00000483519 CDK3Q00526 305 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 GPM6BQ13491 265 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 RPE65Q16518 533 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 STAC2Q6ZMT1 411 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 WFIKKN2Q8TEU8 576 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 NARS2Q96I59 477 aaKnown RBP12.17□□□□□ -0.46
USP40-214ENST00000483519 CCDC86Q9H6F5 360 aaKnown RBP12.17□□□□□ -0.46
USP40-214ENST00000483519 C2orf42Q9NWW7 574 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 MLXQ9UH92 298 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 PEX12O00623 359 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 XRCC3O43542 346 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 ZFPL1O95159 310 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 NDUFB2O95178 105 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 PCCBP05166 539 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 RBM34P42696 430 aaKnown RBP12.17□□□□□ -0.46
USP40-214ENST00000483519 SCRN3Q0VDG4 424 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 TEAD2Q15562 447 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 MLF2Q15773 248 aaPredicted RBP12.17□□□□□ -0.46
USP40-214ENST00000483519 SLC35D3Q5M8T2 416 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 CFAP161Q6P656 301 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 COX18Q8N8Q8 333 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 MFSD9Q8NBP5 474 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 BPIFCQ8NFQ6 507 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 OR4K14Q8NGD5 310 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 OTUB2Q96DC9 234 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 HSPA12BQ96MM6 686 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 INSM2Q96T92 566 aaPredicted RBP12.17□□□□□ -0.46
USP40-214ENST00000483519 SEMA4CQ9C0C4 833 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 SCPEP1Q9HB40 452 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 APMAPQ9HDC9 416 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 HCFC1R1Q9NWW0 138 aa12.17□□□□□ -0.46
USP40-214ENST00000483519 A0A0B4J2E0 115 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 A0A1B0GX12 115 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 AKAIN1P0CW23 69 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 CNR1P21554 472 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 AKR1D1P51857 326 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 S100A12P80511 92 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 TNFRSF17Q02223 184 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 LTBQ06643 244 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 IRF4Q15306 451 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 ZNF77Q15935 545 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 STPG1Q5TH74 334 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 ELP2Q6IA86 826 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 UQCC3Q6UW78 93 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 MOB3CQ70IA8 216 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 ZNF546Q86UE3 836 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 OR2L3Q8NG85 312 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 CCDC107Q8WV48 283 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 RGP1Q92546 391 aaPredicted RBP12.16□□□□□ -0.46
USP40-214ENST00000483519 EXO5Q9H790 373 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 MKL2Q9ULH7 1088 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 NPIPA5A0A0B4J1W7 369 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 TMEM272A0A1B0GTI8 110 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 KANTRA0A1W2PQU2 76 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 NPIPA7E9PJI5 369 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 H2AFB1P0C5Y9 115 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 NPIPA8P0DM63 369 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 AK4P27144 223 aaPredicted RBP12.16□□□□□ -0.46
USP40-214ENST00000483519 ERVK-25P63136 954 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 Q499Y3 187 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 SLC6A19Q695T7 634 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.16□□□□□ -0.46
USP40-214ENST00000483519 TMPRSS12Q86WS5 348 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 ZNF227Q86WZ6 799 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 GAL3ST3Q96A11 431 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 LGR4Q9BXB1 951 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 ZBP1Q9H171 429 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 PIGMQ9H3S5 423 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 BARX1Q9HBU1 254 aaPredicted RBP12.16□□□□□ -0.46
USP40-214ENST00000483519 KCNE5Q9UJ90 142 aa12.16□□□□□ -0.46
USP40-214ENST00000483519 PRRC2BQ5JSZ5 2229 aaKnown RBP12.15□□□□□ -0.46
USP40-214ENST00000483519 NUMA1Q14980 2115 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms