RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 SNAPINO95295 136 aa12.47□□□□□ -0.41
USP42-206ENST00000479544 CD3DP04234 171 aa12.47□□□□□ -0.41
USP42-206ENST00000479544 LPLP06858 475 aa12.47□□□□□ -0.41
USP42-206ENST00000479544 RAB40ALP0C0E4 278 aa12.47□□□□□ -0.41
USP42-206ENST00000479544 C19orf57Q0VDD7 668 aa12.47□□□□□ -0.41
USP42-206ENST00000479544 C1orf189Q5VU69 101 aa12.47□□□□□ -0.41
USP42-206ENST00000479544 C3orf33Q6P1S2 294 aa12.47□□□□□ -0.41
USP42-206ENST00000479544 RAB40AQ8WXH6 277 aa12.47□□□□□ -0.41
USP42-206ENST00000479544 MARC2Q969Z3 335 aa12.47□□□□□ -0.41
USP42-206ENST00000479544 SLC35A4Q96G79 324 aa12.47□□□□□ -0.41
USP42-206ENST00000479544 SLC25A19Q9HC21 320 aa12.47□□□□□ -0.41
USP42-206ENST00000479544 AHCTF1Q8WYP5 2266 aa12.47□□□□□ -0.41
USP42-206ENST00000479544 CEP250Q9BV73 2442 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 A0A0B4J293 547 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 RPS10-NUDT3A0A1W2PQS6 291 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 A0A1W2PS29 197 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 GABARAPH6UMI1 98 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 RBMXL2O75526 392 aaKnown RBP12.46□□□□□ -0.41
USP42-206ENST00000479544 H2BFMP0C1H6 154 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 RRASP10301 218 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 HIST1H1CP16403 213 aaKnown RBP12.46□□□□□ -0.41
USP42-206ENST00000479544 RPS10P46783 165 aaKnown RBP12.46□□□□□ -0.41
USP42-206ENST00000479544 EPHA4P54764 986 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 TCEAL5Q5H9L2 206 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 HACD4Q5VWC8 232 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 COX15Q7KZN9 410 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 CDRT4Q8N9R6 151 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 ZNF417Q8TAU3 575 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 BCL7CQ8WUZ0 217 aaPredicted RBP12.46□□□□□ -0.41
USP42-206ENST00000479544 C14orf79Q96F83 325 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 CNRIP1Q96F85 164 aaPredicted RBP12.46□□□□□ -0.41
USP42-206ENST00000479544 INTS14Q96SY0 518 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 PPP1R3EQ9H7J1 279 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 MED17Q9NVC6 651 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 DZANK1Q9NVP4 752 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 NCDNQ9UBB6 729 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 FBXO4Q9UKT5 387 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 UNC13CQ8NB66 2214 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 PRAMEF25A6NGN4 478 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 GIPP09681 153 aaPredicted RBP12.46□□□□□ -0.41
USP42-206ENST00000479544 TPT1P13693 172 aaKnown RBP12.46□□□□□ -0.41
USP42-206ENST00000479544 PI3P19957 117 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 CAMLGP49069 296 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 RIDAP52758 137 aaKnown RBP12.46□□□□□ -0.41
USP42-206ENST00000479544 TAS2R20P59543 309 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 OR2B8PP59922 312 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 EBPQ15125 230 aaKnown RBP12.46□□□□□ -0.41
USP42-206ENST00000479544 SPIN3Q5JUX0 258 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 GPR139Q6DWJ6 353 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 TMEM64Q6YI46 380 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 HTR3DQ70Z44 454 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 P4HA3Q7Z4N8 544 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 GAS2L1Q99501 681 aaPredicted RBP12.46□□□□□ -0.41
USP42-206ENST00000479544 SLC23A2Q9UGH3 650 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 MAFFQ9ULX9 164 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 CA5BQ9Y2D0 317 aa12.46□□□□□ -0.41
USP42-206ENST00000479544 SLC16A7O60669 478 aa12.46□□□□□ -0.42
USP42-206ENST00000479544 KAT7O95251 611 aa12.46□□□□□ -0.42
USP42-206ENST00000479544 OR2T7P0C7T2 308 aa12.46□□□□□ -0.42
USP42-206ENST00000479544 ADH6P28332 368 aa12.46□□□□□ -0.42
USP42-206ENST00000479544 TNK1Q13470 666 aa12.46□□□□□ -0.42
USP42-206ENST00000479544 CARD17Q5XLA6 110 aa12.46□□□□□ -0.42
USP42-206ENST00000479544 LAS2Q8IYD9 372 aa12.46□□□□□ -0.42
USP42-206ENST00000479544 ANKRD53Q8N9V6 530 aa12.46□□□□□ -0.42
USP42-206ENST00000479544 OR52R1Q8NGF1 315 aa12.46□□□□□ -0.42
USP42-206ENST00000479544 OR2T27Q8NH04 317 aa12.46□□□□□ -0.42
USP42-206ENST00000479544 ZDHHC5Q9C0B5 715 aa12.46□□□□□ -0.42
USP42-206ENST00000479544 POFUT1Q9H488 388 aa12.46□□□□□ -0.42
USP42-206ENST00000479544 CBLCQ9ULV8 474 aa12.46□□□□□ -0.42
USP42-206ENST00000479544 TMEM14AQ9Y6G1 99 aa12.46□□□□□ -0.42
USP42-206ENST00000479544 TRIM64BA6NI03 449 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 TXNDC12O95881 172 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 ZDHHC11BP0C7U3 371 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 BCL6P41182 706 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 CAPZA1P52907 286 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 FIGLAQ6QHK4 219 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 TRILQ7L0X0 811 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 CSNK1A1LQ8N752 337 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 OR2AK2Q8NG84 335 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 OR10Z1Q8NGY1 313 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 CCDC86Q9H6F5 360 aaKnown RBP12.45□□□□□ -0.42
USP42-206ENST00000479544 C20orf141Q9NUB4 165 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 C14orf166Q9Y224 244 aaKnown RBP12.45□□□□□ -0.42
USP42-206ENST00000479544 TSPAN11A1L157 253 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 GGT3PA6NGU5 568 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 KDM4EB2RXH2 506 aaPredicted RBP12.45□□□□□ -0.42
USP42-206ENST00000479544 PRSS44E7EML9 344 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 NPIPA5E9PKD4 350 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 CTNSO60931 367 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 AHSA1O95433 338 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 APOC1P02654 83 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 GAAP10253 952 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 MFSD13AQ14CX5 517 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 AVPI1Q5T686 147 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 ZNF836Q6ZNA1 936 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 CLRN3Q8NCR9 226 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 CHRDQ9H2X0 955 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 NTMQ9P121 344 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 NPIPA1Q9UND3 350 aa12.45□□□□□ -0.42
USP42-206ENST00000479544 MEIKINA0A087WXM9 373 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms