RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 BIVMQ86UB2 503 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 P2RY8Q86VZ1 359 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 VRK2Q86Y07 508 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 EGFL6Q8IUX8 553 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 CCDC103Q8IW40 242 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 CADM2Q8N3J6 435 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 ZNF611Q8N823 705 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 BBS10Q8TAM1 723 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 TMEM171Q8WVE6 324 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 AKAP1Q92667 903 aaKnown RBP eCLIP5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 MUCL1Q96DR8 90 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 DNAJA3Q96EY1 480 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 AURKBQ96GD4 344 aaPredicted RBP5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 TMEM19Q96HH6 336 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 C18orf12Q96KH6 178 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 CCDC28BQ9BUN5 200 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 SPATA9Q9BWV2 254 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 PAIP1Q9H074 479 aaKnown RBP5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 A4GALTQ9NPC4 353 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 SLCO1B3Q9NPD5 702 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 ARGLU1Q9NWB6 273 aaPredicted RBP5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 TMEM45AQ9NWC5 275 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 CCDC167Q9P0B6 97 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 FBXL7Q9UJT9 491 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 SLC9A8Q9Y2E8 581 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 IFT52Q9Y366 437 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 RNF115Q9Y4L5 304 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 SETD2Q9BYW2 2564 aaPredicted RBP5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 CIB4A0PJX0 185 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 OR5H1A6NKK0 313 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 CCT8L1PA6NM43 557 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 A8MVM7 634 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 FAM171A2A8MVW0 826 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 C5orf58C9J3I9 102 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 RAD51DO75771 328 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 PGM3O95394 542 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 IGHV3-9P01782 118 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 GKN3PP0CG01 181 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 PAX1P15863 534 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 HOXB9P17482 250 aaPredicted RBP5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 NCF2P19878 526 aaPredicted RBP5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 PPIBP23284 216 aaKnown RBP5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 EDNRAP25101 427 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 IDUAP35475 653 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 ACAA2P42765 397 aaKnown RBP5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 ATP4BP51164 291 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 AQP5P55064 265 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 RPS4XP62701 263 aaKnown RBP5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 BSPH1Q075Z2 132 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 CEACAM7Q14002 265 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 SQLEQ14534 574 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 SLC17A1Q14916 467 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 OR7A5Q15622 319 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 ZNF672Q499Z4 452 aaPredicted RBP5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 ZNF311Q5JNZ3 666 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 OTUD3Q5T2D3 398 aaPredicted RBP5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 LRIF1Q5T3J3 769 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 GCNT6Q5T4J0 391 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 OR7E24Q6IFN5 339 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 CASP12Q6UXS9 341 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 CLIP4Q8N3C7 705 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 ZNF433Q8N7K0 673 aaPredicted RBP5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 IGFBPL1Q8WX77 278 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 MAL2Q969L2 176 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 SLC35B4Q969S0 331 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 FBXW5Q969U6 566 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 SPDL1Q96EA4 605 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 Q96MF0 132 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 EBF4Q9BQW3 602 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 TAPBPLQ9BX59 468 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 RABEP2Q9H5N1 569 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 VIPAS39Q9H9C1 493 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 BCL2L10Q9HD36 194 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 INTS9Q9NV88 658 aaKnown RBP5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 PARPBPQ9NWS1 579 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 ASB6Q9NWX5 421 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 TAS2R16Q9NYV7 291 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 SLC25A37Q9NYZ2 338 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 MALT1Q9UDY8 824 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 TMEFF2Q9UIK5 374 aaPredicted RBP5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 CORO2BQ9UQ03 480 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 FLVCR1Q9Y5Y0 555 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 PLCE1Q9P212 2302 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 ZFHX3Q15911 3703 aa5.98□□□□□ -1.45
CCDC88A-213ENST00000476903 A0A1W2PP18 115 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 DPRXA6NFQ7 191 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 LIPT2A6NK58 231 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 AQP7P3A6NL99 342 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 FRS3O43559 492 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 RAMP1O60894 148 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 AKR7A3O95154 331 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 PRG2P13727 222 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 ETS2P15036 469 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 PRKAR1BP31321 381 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 RPL11P62913 178 aaKnown RBP5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 TGFBR3Q03167 851 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 FAPQ12884 760 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 BNIP2Q12982 314 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 AGKQ53H12 422 aa5.97□□□□□ -1.45
CCDC88A-213ENST00000476903 C1QTNF12Q5T7M4 302 aa5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms